Mercurial > repos > peterjc > seq_select_by_id
diff tools/filters/seq_select_by_id.xml @ 2:28d52478ace9 draft
Uploaded v0.0.4 which adds a unit test.
| author | peterjc |
|---|---|
| date | Mon, 15 Apr 2013 12:28:51 -0400 |
| parents | 50a8a6917a9c |
| children | 19e26966ed3e |
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--- a/tools/filters/seq_select_by_id.xml Fri May 18 12:25:12 2012 -0400 +++ b/tools/filters/seq_select_by_id.xml Mon Apr 15 12:28:51 2013 -0400 @@ -1,5 +1,6 @@ -<tool id="seq_select_by_id" name="Select sequences by ID" version="0.0.3"> +<tool id="seq_select_by_id" name="Select sequences by ID" version="0.0.4"> <description>from a tabular file</description> + <version_command interpreter="python">seq_select_by_id.py --version</version_command> <command interpreter="python"> seq_select_by_id.py $input_tabular $column $input_file $input_file.ext $output_file </command> @@ -22,6 +23,12 @@ </data> </outputs> <tests> + <test> + <param name="input_file" value="k12_ten_proteins.fasta" ftype="fasta" /> + <param name="input_tabular" value="k12_hypothetical.tabular" ftype="tabular" /> + <param name="column" value="1" /> + <output name="output_file" file="k12_hypothetical.fasta" ftype="fasta" /> + </test> </tests> <requirements> <requirement type="python-module">Bio</requirement>