Mercurial > repos > peterjc > tmhmm_and_signalp
comparison tools/protein_analysis/wolf_psort.xml @ 9:e52220a9ddad draft
Uploaded v0.1.2
Use the new <stdio> settings in the XML wrappers to catch errors.
Obeys SGE style XNSLOTS environment variable for thread count (otherwise default to 4).
| author | peterjc |
|---|---|
| date | Fri, 25 Jan 2013 06:08:31 -0500 |
| parents | a290c6d4e658 |
| children | 99b82a2b1272 |
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| 8:976a5f2833cd | 9:e52220a9ddad |
|---|---|
| 1 <tool id="wolf_psort" name="WoLF PSORT" version="0.0.1"> | 1 <tool id="wolf_psort" name="WoLF PSORT" version="0.0.2"> |
| 2 <description>Eukaryote protein subcellular localization prediction</description> | 2 <description>Eukaryote protein subcellular localization prediction</description> |
| 3 <command interpreter="python"> | 3 <command interpreter="python"> |
| 4 wolf_psort.py $organism 8 $fasta_file $tabular_file | 4 wolf_psort.py $organism 8 $fasta_file $tabular_file |
| 5 ##I want the number of threads to be a Galaxy config option... | 5 ##I want the number of threads to be a Galaxy config option... |
| 6 </command> | 6 </command> |
| 7 <stdio> | |
| 8 <!-- Anything other than zero is an error --> | |
| 9 <exit_code range="1:" /> | |
| 10 <exit_code range=":-1" /> | |
| 11 </stdio> | |
| 7 <inputs> | 12 <inputs> |
| 8 <param name="fasta_file" type="data" format="fasta" label="FASTA file of protein sequences"/> | 13 <param name="fasta_file" type="data" format="fasta" label="FASTA file of protein sequences"/> |
| 9 <param name="organism" type="select" display="radio" label="Organism"> | 14 <param name="organism" type="select" display="radio" label="Organism"> |
| 10 <option value="animal">Animal</option> | 15 <option value="animal">Animal</option> |
| 11 <option value="plant">Plant</option> | 16 <option value="plant">Plant</option> |