Mercurial > repos > peterjc > tmhmm_and_signalp

diff tools/protein_analysis/wolf_psort.xml @ 9:e52220a9ddad draft

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Uploaded v0.1.2 Use the new <stdio> settings in the XML wrappers to catch errors. Obeys SGE style XNSLOTS environment variable for thread count (otherwise default to 4).
author peterjc
date Fri, 25 Jan 2013 06:08:31 -0500
parents a290c6d4e658
children 99b82a2b1272
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--- a/tools/protein_analysis/wolf_psort.xml	Mon Jul 30 12:56:54 2012 -0400
+++ b/tools/protein_analysis/wolf_psort.xml	Fri Jan 25 06:08:31 2013 -0500
@@ -1,9 +1,14 @@
-<tool id="wolf_psort" name="WoLF PSORT" version="0.0.1">
+<tool id="wolf_psort" name="WoLF PSORT" version="0.0.2">
     <description>Eukaryote protein subcellular localization prediction</description>
     <command interpreter="python">
       wolf_psort.py $organism 8 $fasta_file $tabular_file
       ##I want the number of threads to be a Galaxy config option...
     </command>
+    <stdio>
+        <!-- Anything other than zero is an error -->
+        <exit_code range="1:" />
+        <exit_code range=":-1" />
+    </stdio>
     <inputs>
         <param name="fasta_file" type="data" format="fasta" label="FASTA file of protein sequences"/> 
         <param name="organism" type="select" display="radio" label="Organism">