Mercurial > repos > peterjc > tmhmm_and_signalp
comparison tools/protein_analysis/rxlr_motifs.xml @ 17:e6cc27d182a8 draft
Uploaded v0.2.6, embedded citations and uses $GALAXY_SLOTS
author | peterjc |
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date | Fri, 21 Nov 2014 08:19:09 -0500 |
parents | 7de64c8b258d |
children | eb6ac44d4b8e |
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16:7de64c8b258d | 17:e6cc27d182a8 |
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1 <tool id="rxlr_motifs" name="RXLR Motifs" version="0.0.7"> | 1 <tool id="rxlr_motifs" name="RXLR Motifs" version="0.0.9"> |
2 <description>Find RXLR Effectors of Plant Pathogenic Oomycetes</description> | 2 <description>Find RXLR Effectors of Plant Pathogenic Oomycetes</description> |
3 <command interpreter="python"> | 3 <command interpreter="python"> |
4 rxlr_motifs.py $fasta_file 8 $model $tabular_file | 4 rxlr_motifs.py "$fasta_file" "\$GALAXY_SLOTS" $model "$tabular_file" |
5 ##I want the number of threads to be a Galaxy config option... | |
6 </command> | 5 </command> |
7 <stdio> | 6 <stdio> |
8 <!-- Anything other than zero is an error --> | 7 <!-- Anything other than zero is an error --> |
9 <exit_code range="1:" /> | 8 <exit_code range="1:" /> |
10 <exit_code range=":-1" /> | 9 <exit_code range=":-1" /> |
174 http://dx.doi.org/10.1093/protein/10.1.1 | 173 http://dx.doi.org/10.1093/protein/10.1.1 |
175 | 174 |
176 This wrapper is available to install into other Galaxy Instances via the Galaxy | 175 This wrapper is available to install into other Galaxy Instances via the Galaxy |
177 Tool Shed at http://toolshed.g2.bx.psu.edu/view/peterjc/tmhmm_and_signalp | 176 Tool Shed at http://toolshed.g2.bx.psu.edu/view/peterjc/tmhmm_and_signalp |
178 </help> | 177 </help> |
178 <citations> | |
179 <citation type="doi">10.7717/peerj.167</citation> | |
180 <!-- TODO - select from these citations depending on method picked --> | |
181 <citation type="doi">10.1038/nature06203</citation> | |
182 <citation type="doi">10.1105/tpc.107.051037</citation> | |
183 <citation type="doi">10.1371/journal.ppat.0020050</citation> | |
184 <citation type="doi">10.1101/gr.910003</citation> | |
185 <citation type="doi">10.1093/bioinformatics/14.9.755</citation> | |
186 <citation type="doi">10.1093/protein/10.1.1</citation> | |
187 </citations> | |
179 </tool> | 188 </tool> |