Mercurial > repos > peterjc > tmhmm_and_signalp
diff tools/protein_analysis/rxlr_motifs.xml @ 17:e6cc27d182a8 draft
Uploaded v0.2.6, embedded citations and uses $GALAXY_SLOTS
author | peterjc |
---|---|
date | Fri, 21 Nov 2014 08:19:09 -0500 |
parents | 7de64c8b258d |
children | eb6ac44d4b8e |
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--- a/tools/protein_analysis/rxlr_motifs.xml Wed Sep 18 06:16:58 2013 -0400 +++ b/tools/protein_analysis/rxlr_motifs.xml Fri Nov 21 08:19:09 2014 -0500 @@ -1,8 +1,7 @@ -<tool id="rxlr_motifs" name="RXLR Motifs" version="0.0.7"> +<tool id="rxlr_motifs" name="RXLR Motifs" version="0.0.9"> <description>Find RXLR Effectors of Plant Pathogenic Oomycetes</description> <command interpreter="python"> - rxlr_motifs.py $fasta_file 8 $model $tabular_file - ##I want the number of threads to be a Galaxy config option... + rxlr_motifs.py "$fasta_file" "\$GALAXY_SLOTS" $model "$tabular_file" </command> <stdio> <!-- Anything other than zero is an error --> @@ -176,4 +175,14 @@ This wrapper is available to install into other Galaxy Instances via the Galaxy Tool Shed at http://toolshed.g2.bx.psu.edu/view/peterjc/tmhmm_and_signalp </help> + <citations> + <citation type="doi">10.7717/peerj.167</citation> + <!-- TODO - select from these citations depending on method picked --> + <citation type="doi">10.1038/nature06203</citation> + <citation type="doi">10.1105/tpc.107.051037</citation> + <citation type="doi">10.1371/journal.ppat.0020050</citation> + <citation type="doi">10.1101/gr.910003</citation> + <citation type="doi">10.1093/bioinformatics/14.9.755</citation> + <citation type="doi">10.1093/protein/10.1.1</citation> + </citations> </tool>