comparison tools/protein_analysis/wolf_psort.xml @ 17:e6cc27d182a8 draft

Uploaded v0.2.6, embedded citations and uses $GALAXY_SLOTS

16:7de64c8b258d

<tool id="wolf_psort" name="WoLF PSORT" version="0.0.6">
    <description>Eukaryote protein subcellular localization prediction</description>
    <command interpreter="python">
      wolf_psort.py $organism "\$NSLOTS" "$fasta_file" "$tabular_file"
      ##I want the number of threads to be a Galaxy config option...
      ##Set the number of threads in the runner entry in universe_wsgi.ini
      ##which (on SGE at least) will set the $NSLOTS environment variable.
      ##If the environment variable isn't set, get "", and python wrapper
      ##defaults to four threads.
    </command>
    <stdio>
        <!-- Anything other than zero is an error -->

See also http://wolfpsort.org

This wrapper is available to install into other Galaxy Instances via the Galaxy
Tool Shed at http://toolshed.g2.bx.psu.edu/view/peterjc/tmhmm_and_signalp
    </help>
</tool>

17:e6cc27d182a8

<tool id="wolf_psort" name="WoLF PSORT" version="0.0.8">
    <description>Eukaryote protein subcellular localization prediction</description>
    <command interpreter="python">
      wolf_psort.py $organism "\$GALAXY_SLOTS" "$fasta_file" "$tabular_file"
      ##If the environment variable isn't set, get "", and python wrapper
      ##defaults to four threads.
    </command>
    <stdio>
        <!-- Anything other than zero is an error -->

See also http://wolfpsort.org

This wrapper is available to install into other Galaxy Instances via the Galaxy
Tool Shed at http://toolshed.g2.bx.psu.edu/view/peterjc/tmhmm_and_signalp
    </help>
    <citations>
        <citation type="doi">10.7717/peerj.167</citation>
        <citation type="doi">10.1093/nar/gkm259</citation>
    </citations>
</tool>