diff tools/protein_analysis/wolf_psort.xml @ 17:e6cc27d182a8 draft

Uploaded v0.2.6, embedded citations and uses $GALAXY_SLOTS

--- a/tools/protein_analysis/wolf_psort.xml	Wed Sep 18 06:16:58 2013 -0400
+++ b/tools/protein_analysis/wolf_psort.xml	Fri Nov 21 08:19:09 2014 -0500
@@ -1,10 +1,7 @@
-<tool id="wolf_psort" name="WoLF PSORT" version="0.0.6">
+<tool id="wolf_psort" name="WoLF PSORT" version="0.0.8">
     <description>Eukaryote protein subcellular localization prediction</description>
     <command interpreter="python">
-      wolf_psort.py $organism "\$NSLOTS" "$fasta_file" "$tabular_file"
-      ##I want the number of threads to be a Galaxy config option...
-      ##Set the number of threads in the runner entry in universe_wsgi.ini
-      ##which (on SGE at least) will set the $NSLOTS environment variable.
+      wolf_psort.py $organism "\$GALAXY_SLOTS" "$fasta_file" "$tabular_file"
       ##If the environment variable isn't set, get "", and python wrapper
       ##defaults to four threads.
     </command>
@@ -150,4 +147,8 @@
 This wrapper is available to install into other Galaxy Instances via the Galaxy
 Tool Shed at http://toolshed.g2.bx.psu.edu/view/peterjc/tmhmm_and_signalp
     </help>
+    <citations>
+        <citation type="doi">10.7717/peerj.167</citation>
+        <citation type="doi">10.1093/nar/gkm259</citation>
+    </citations>
 </tool>