diff tools/protein_analysis/README @ 1:3ff1dcbb9440

Migrated tool version 0.0.3 from old tool shed archive to new tool shed repository

--- a/tools/protein_analysis/README	Tue Jun 07 18:03:34 2011 -0400
+++ b/tools/protein_analysis/README	Tue Jun 07 18:04:05 2011 -0400
@@ -43,8 +43,11 @@
    subfolder test-data:
 
 four_human_proteins.fasta
-four_human_proteins.signalp3.tsv
-four_human_proteins.tmhmm2.tsv
+four_human_proteins_signalp3.tabular
+four_human_proteins_tmhmm2.tabular
+empty.fasta
+empty_tmhmm2.tabular
+empty_signalp3.tabular
 
 7. Run the Galaxy functional tests for these new wrappers with:
 
@@ -57,3 +60,42 @@
 ./run_functional_tests.sh -sid Protein_sequence_analysis-protein_analysis
 
 8. Restart Galaxy and check the new tools are shown and work.
+
+
+History
+=======
+
+v0.0.1 - Initial release
+v0.0.2 - Corrected some typos in the help text
+       - Renamed test output file to use Galaxy convention of *.tabular
+v0.0.3 - Check for tmhmm2 silent failures (no output)
+       - Additional unit tests
+
+Developers
+==========
+
+These wrappers are currently being developed on the following hg branch:
+http://bitbucket.org/peterjc/galaxy-central/src/seq_analysis
+
+For making the "Galaxy Tool Shed" http://community.g2.bx.psu.edu/ tarball use
+the following command from the Galaxy root folder:
+
+tar -czf tmhmm_and_signalp.tar.gz tools/protein_analysis/LICENSE tools/protein_analysis/README tools/protein_analysis/suite_config.xml tools/protein_analysis/seq_analysis_utils.py tools/protein_analysis/signalp3.xml tools/protein_analysis/signalp3.py tools/protein_analysis/tmhmm2.xml tools/protein_analysis/tmhmm2.py test-data/four_human_proteins.* test-data/empty.fasta test-data/empty_tmhmm2.tabular test-data/empty_signalp3.tabular
+
+Check this worked:
+
+$ tar -tzf tmhmm_and_signalp.tar.gz
+tools/protein_analysis/LICENSE
+tools/protein_analysis/README
+tools/protein_analysis/suite_config.xml
+tools/protein_analysis/seq_analysis_utils.py
+tools/protein_analysis/signalp3.xml
+tools/protein_analysis/signalp3.py
+tools/protein_analysis/tmhmm2.xml
+tools/protein_analysis/tmhmm2.py
+test-data/four_human_proteins.fasta
+test-data/four_human_proteins.signalp3.tabular
+test-data/four_human_proteins.tmhmm2.tabular
+test-data/empty.fasta
+test-data/empty_tmhmm2.tabular
+test-data/empty_signalp3.tabular