annotate dante_ltr_summary.xml @ 17:d1c3b29b1478 draft

planemo upload commit ce025ba66edc87ff8ced32d5fdb36109f12cebf0-dirty
author petr-novak
date Thu, 10 Aug 2023 12:22:28 +0000
parents 7ec262f92d89
children 27e5f58763f2
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
17
d1c3b29b1478 planemo upload commit ce025ba66edc87ff8ced32d5fdb36109f12cebf0-dirty
petr-novak
parents: 16
diff changeset
1 <tool id="dante_ltr_summary" name="Summarize DANTE_LTR output" version="@TOOL_VERSION@" python_template_version="3.5">
d1c3b29b1478 planemo upload commit ce025ba66edc87ff8ced32d5fdb36109f12cebf0-dirty
petr-novak
parents: 16
diff changeset
2 <macros>
d1c3b29b1478 planemo upload commit ce025ba66edc87ff8ced32d5fdb36109f12cebf0-dirty
petr-novak
parents: 16
diff changeset
3 <import>macros.xml</import>
d1c3b29b1478 planemo upload commit ce025ba66edc87ff8ced32d5fdb36109f12cebf0-dirty
petr-novak
parents: 16
diff changeset
4 </macros>
d1c3b29b1478 planemo upload commit ce025ba66edc87ff8ced32d5fdb36109f12cebf0-dirty
petr-novak
parents: 16
diff changeset
5 <expand macro="requirements" />
16
7ec262f92d89 planemo upload commit ba9c740b818bbd5b5a7a5e2afbea827f5bb91419
petr-novak
parents:
diff changeset
6 <command detect_errors="exit_code"><![CDATA[
17
d1c3b29b1478 planemo upload commit ce025ba66edc87ff8ced32d5fdb36109f12cebf0-dirty
petr-novak
parents: 16
diff changeset
7 dante_ltr_summary -g '$input1' -o output &&
16
7ec262f92d89 planemo upload commit ba9c740b818bbd5b5a7a5e2afbea827f5bb91419
petr-novak
parents:
diff changeset
8 mv output.pdf '$output1'
7ec262f92d89 planemo upload commit ba9c740b818bbd5b5a7a5e2afbea827f5bb91419
petr-novak
parents:
diff changeset
9 ]]></command>
7ec262f92d89 planemo upload commit ba9c740b818bbd5b5a7a5e2afbea827f5bb91419
petr-novak
parents:
diff changeset
10 <inputs>
7ec262f92d89 planemo upload commit ba9c740b818bbd5b5a7a5e2afbea827f5bb91419
petr-novak
parents:
diff changeset
11 <param type="data" name="input1" format="gff3" label="GFF3 output from DANTE_LTR" />
7ec262f92d89 planemo upload commit ba9c740b818bbd5b5a7a5e2afbea827f5bb91419
petr-novak
parents:
diff changeset
12 </inputs>
7ec262f92d89 planemo upload commit ba9c740b818bbd5b5a7a5e2afbea827f5bb91419
petr-novak
parents:
diff changeset
13 <outputs>
7ec262f92d89 planemo upload commit ba9c740b818bbd5b5a7a5e2afbea827f5bb91419
petr-novak
parents:
diff changeset
14 <data label="DANTE_LTR summmary from dataset $input1.hid" format="pdf" name="output1" />
7ec262f92d89 planemo upload commit ba9c740b818bbd5b5a7a5e2afbea827f5bb91419
petr-novak
parents:
diff changeset
15 </outputs>
7ec262f92d89 planemo upload commit ba9c740b818bbd5b5a7a5e2afbea827f5bb91419
petr-novak
parents:
diff changeset
16 <help><![CDATA[
7ec262f92d89 planemo upload commit ba9c740b818bbd5b5a7a5e2afbea827f5bb91419
petr-novak
parents:
diff changeset
17 This tool takes GFF3 output from DANTE_LTR and make graphical summary of the results.
7ec262f92d89 planemo upload commit ba9c740b818bbd5b5a7a5e2afbea827f5bb91419
petr-novak
parents:
diff changeset
18 ]]></help>
17
d1c3b29b1478 planemo upload commit ce025ba66edc87ff8ced32d5fdb36109f12cebf0-dirty
petr-novak
parents: 16
diff changeset
19 </tool>