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planemo upload commit 90a125a687a7013e6f00b057db670db5583c3b0f
author petr-novak
date Thu, 18 Apr 2024 08:56:19 +0000
parents 27e5f58763f2
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1 <tool id="dante_ltr_summary" name="Summarize DANTE_LTR output" version="@TOOL_VERSION@" python_template_version="3.5">
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2 <macros>
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3 <import>macros.xml</import>
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4 </macros>
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5 <expand macro="requirements" />
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6 <command detect_errors="exit_code"><![CDATA[
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7 dante_ltr_summary -g '$input1' -o output &&
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8 ls -l &&
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9 cp output.html $output1 &&
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10 mkdir -p ${output1.extra_files_path} &&
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11 cp -r output_plots ${output1.extra_files_path}/
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12 ]]></command>
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13 <inputs>
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14 <param type="data" name="input1" format="gff3" label="GFF3 output from DANTE_LTR" />
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15 </inputs>
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16 <outputs>
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17 <data label="DANTE_LTR summmary from dataset $input1.hid" format="html" name="output1" />
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18 </outputs>
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19 <help><![CDATA[
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20 This tool takes GFF3 output from DANTE_LTR and make graphical summary of the results.
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21 ]]></help>
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22 </tool>