Mercurial > repos > petr-novak > dante_ltr
changeset 22:d5508ce50c49 draft
planemo upload commit 398baa926d7864efeb2c349c52827fd6988e60e6-dirty
| author | petr-novak |
|---|---|
| date | Tue, 28 Nov 2023 14:32:03 +0000 |
| parents | 08b5e23859ed |
| children | 27e5f58763f2 |
| files | dante_ltr_search.xml macros.xml |
| diffstat | 2 files changed, 10 insertions(+), 2 deletions(-) [+] |
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--- a/dante_ltr_search.xml Mon Oct 23 12:39:09 2023 +0000 +++ b/dante_ltr_search.xml Tue Nov 28 14:32:03 2023 +0000 @@ -12,6 +12,12 @@ mv output.gff3 $te_ltr_gff && mv output_statistics.csv $statistics + && + if [ -f output_summary.html ]; then cp output_summary.html $html_report; fi + && + mkdir -p ${html_report.extra_files_path} + && + if [ -d output_summary_plots ]; then cp -r output_summary_plots ${html_report.extra_files_path}/; fi ]]></command> <inputs> <param type="data" name="dante" format="gff3" label="GFF3 output from DANTE pipeline - full output"/> @@ -23,6 +29,8 @@ based on DANTE annotation $dante.hid and reference $reference.hid" /> <data name="statistics" format="tabular" label="LTR retrotransposons detection summary based on $dante.hid and reference $reference.hid" /> + <data name="html_report" format="html" label="LTR retrotransposons detection on $dante.hid and $reference.hid report" /> + </outputs> <help><![CDATA[ This tool uses output from DANTE annotation pipeline to identify full length LTR
--- a/macros.xml Mon Oct 23 12:39:09 2023 +0000 +++ b/macros.xml Tue Nov 28 14:32:03 2023 +0000 @@ -1,6 +1,6 @@ <macros> - <token name="@TOOL_VERSION@">2.3.8</token> - <token name="@REQUIREMENT_VERSION@">0.2.3.8</token> + <token name="@TOOL_VERSION@">3.5.0</token> + <token name="@REQUIREMENT_VERSION@">0.3.5.0</token> <xml name="requirements"> <requirements> <requirement type="package" version="@REQUIREMENT_VERSION@">dante_ltr</requirement>