annotate extract_contigs_from_archive.xml @ 1:2e811f988e1d draft

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author petr-novak
date Wed, 12 Jun 2019 08:19:09 -0400
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children ff658cf87f16
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1 <tool id="extract_contigs" name="Extract contigs from RepeatExplorer2 archive">
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2 <command detect_errors="exit_code">
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3 unzip -p ${RepeatExplorer_archive} contigs.fasta &gt; ${contigs}
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4 </command>
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5
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6 <inputs>
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7 <param name="RepeatExplorer_archive" label="Archive with RepeatExplorer2 results" type="data" format="zip"/>
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8 </inputs>
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9
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10 <outputs>
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11 <data name="contigs" format="fasta" label="contigs from RepeatExplorer clustering - data ${RepeatExplorer_archive.hid}" />
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12 </outputs>
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13 </tool>