Mercurial > repos > petr-novak > re_utils
annotate extract_contigs_from_archive.xml @ 23:36c418bca8b2 draft
planemo upload commit 20bdf879b52796d3fb251a20807191ff02084d3c-dirty
| author | petr-novak |
|---|---|
| date | Wed, 02 Aug 2023 11:50:25 +0000 |
| parents | c2c69c6090f0 |
| children | b50db133106a |
| rev | line source |
|---|---|
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36c418bca8b2
planemo upload commit 20bdf879b52796d3fb251a20807191ff02084d3c-dirty
petr-novak
parents:
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changeset
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1 <tool id="extract_contigs" name="Extract contigs from RepeatExplorer2 archive" version="1.0.0.3"> |
| 1 | 2 <command detect_errors="exit_code"> |
| 3 unzip -p ${RepeatExplorer_archive} contigs.fasta > ${contigs} | |
| 2 | 4 && |
| 5 unzip -p -j ${RepeatExplorer_archive} "*.aln" > ${aln} | |
| 1 | 6 </command> |
| 7 | |
| 8 <inputs> | |
| 9 <param name="RepeatExplorer_archive" label="Archive with RepeatExplorer2 results" type="data" format="zip"/> | |
| 10 </inputs> | |
| 11 | |
| 12 <outputs> | |
| 9 | 13 <data name="contigs" format="fasta" label="Contigs from RepeatExplorer clustering from data ${RepeatExplorer_archive.hid}" /> |
| 14 <data name="aln" format="txt" label="Contigs from RepeatExplorer clustering in aln format from data ${RepeatExplorer_archive.hid}" /> | |
| 1 | 15 </outputs> |
| 16 </tool> |