Mercurial > repos > petr-novak > re_utils
comparison extract_contigs_from_archive.xml @ 1:2e811f988e1d draft
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author | petr-novak |
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date | Wed, 12 Jun 2019 08:19:09 -0400 |
parents | |
children | ff658cf87f16 |
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0:a4cd8608ef6b | 1:2e811f988e1d |
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1 <tool id="extract_contigs" name="Extract contigs from RepeatExplorer2 archive"> | |
2 <command detect_errors="exit_code"> | |
3 unzip -p ${RepeatExplorer_archive} contigs.fasta > ${contigs} | |
4 </command> | |
5 | |
6 <inputs> | |
7 <param name="RepeatExplorer_archive" label="Archive with RepeatExplorer2 results" type="data" format="zip"/> | |
8 </inputs> | |
9 | |
10 <outputs> | |
11 <data name="contigs" format="fasta" label="contigs from RepeatExplorer clustering - data ${RepeatExplorer_archive.hid}" /> | |
12 </outputs> | |
13 </tool> |