comparison ChipSeqRatioDef.xml @ 22:58807b35777a draft

planemo upload commit 20bdf879b52796d3fb251a20807191ff02084d3c-dirty

21:f4ed6a65a2ff

<tool id="chip_seq_ratio_1" name="ChIP-Seq Mapper" version="0.1.1">
  <stdio>
    <exit_code range="1:" level="fatal" description="Error"/>
  </stdio>
    <description></description>
    <requirements>
      <requirement type="package">r-base64enc</requirement>
      <requirement type="package">r-r2html</requirement>
      <requirement type="package">blast</requirement>
      <!-- <requirement type="package">chip_seq_ration</requirement> -->
    </requirements>
    <command interpreter="python3">
	ChipSeqRatioAnalysis.py 
	--ChipSeq=${ChipFile}
	--InputSeq=${InputFile}
	--Contigs=${ContigFile}
	--output=${OutputFile}
	--html=${ReportFile}

22:58807b35777a

<tool id="chip_seq_ratio_1" name="ChIP-Seq Mapper" version="0.1.1.3">
  <stdio>
    <exit_code range="1:" level="fatal" description="Error"/>
  </stdio>
    <description></description>
    <requirements>
      <requirement type="package">r-base64enc</requirement>
      <requirement type="package">r-r2html</requirement>
      <requirement type="package">blast</requirement>
      <!-- <requirement type="package">chip_seq_ration</requirement> -->
    </requirements>
    <required_files>
        <include type="literal" path="ChipSeqRatioAnalysis.py"/>
        <include type="literal" path="ChipSeqRatioAnalysis.R"/>
    </required_files>
    <command>
	python '$__tool_directory__'/ChipSeqRatioAnalysis.py
	--ChipSeq=${ChipFile}
	--InputSeq=${InputFile}
	--Contigs=${ContigFile}
	--output=${OutputFile}
	--html=${ReportFile}