Mercurial > repos > petr-novak > re_utils

diff ChipSeqRatioDef.xml @ 22:58807b35777a draft

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planemo upload commit 20bdf879b52796d3fb251a20807191ff02084d3c-dirty
author petr-novak
date Wed, 02 Aug 2023 11:31:12 +0000
parents 5376e1c9adec
children 36c418bca8b2
line wrap: on
line diff
--- a/ChipSeqRatioDef.xml	Thu Jul 27 09:46:13 2023 +0000
+++ b/ChipSeqRatioDef.xml	Wed Aug 02 11:31:12 2023 +0000
@@ -1,4 +1,4 @@
-<tool id="chip_seq_ratio_1" name="ChIP-Seq Mapper" version="0.1.1">
+<tool id="chip_seq_ratio_1" name="ChIP-Seq Mapper" version="0.1.1.3">
   <stdio>
     <exit_code range="1:" level="fatal" description="Error"/>
   </stdio>
@@ -9,8 +9,12 @@
       <requirement type="package">blast</requirement>
       <!-- <requirement type="package">chip_seq_ration</requirement> -->
     </requirements>
-    <command interpreter="python3">
-	ChipSeqRatioAnalysis.py 
+    <required_files>
+        <include type="literal" path="ChipSeqRatioAnalysis.py"/>
+        <include type="literal" path="ChipSeqRatioAnalysis.R"/>
+    </required_files>
+    <command>
+	python '$__tool_directory__'/ChipSeqRatioAnalysis.py
 	--ChipSeq=${ChipFile}
 	--InputSeq=${InputFile}
 	--Contigs=${ContigFile}