Mercurial > repos > petr-novak > re_utils

diff extract_contigs_from_archive.xml @ 1:2e811f988e1d draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author petr-novak
date Wed, 12 Jun 2019 08:19:09 -0400
parents
children ff658cf87f16
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/extract_contigs_from_archive.xml	Wed Jun 12 08:19:09 2019 -0400
@@ -0,0 +1,13 @@
+<tool id="extract_contigs" name="Extract contigs from RepeatExplorer2 archive">
+  <command detect_errors="exit_code">
+    unzip -p ${RepeatExplorer_archive} contigs.fasta  &gt; ${contigs}
+  </command>
+
+  <inputs>
+    <param name="RepeatExplorer_archive" label="Archive with RepeatExplorer2 results" type="data" format="zip"/>
+  </inputs>
+
+  <outputs>
+    <data name="contigs" format="fasta" label="contigs from RepeatExplorer clustering - data ${RepeatExplorer_archive.hid}" />
+  </outputs>
+</tool>