Mercurial > repos > petr-novak > re_utils

view extract_contigs_from_archive.xml @ 1:2e811f988e1d draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author petr-novak
date Wed, 12 Jun 2019 08:19:09 -0400
parents
children ff658cf87f16
line wrap: on
line source

<tool id="extract_contigs" name="Extract contigs from RepeatExplorer2 archive">
  <command detect_errors="exit_code">
    unzip -p ${RepeatExplorer_archive} contigs.fasta  &gt; ${contigs}
  </command>

  <inputs>
    <param name="RepeatExplorer_archive" label="Archive with RepeatExplorer2 results" type="data" format="zip"/>
  </inputs>

  <outputs>
    <data name="contigs" format="fasta" label="contigs from RepeatExplorer clustering - data ${RepeatExplorer_archive.hid}" />
  </outputs>
</tool>