Mercurial > repos > petr-novak > re_utils

changeset 10:768883847008 draft

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Uploaded
author petr-novak
date Mon, 03 Feb 2020 06:44:58 -0500
parents c2c69c6090f0
children 16150c85fb3a
files paired_fastq_filtering.xml single_fastq_filtering.xml
diffstat 2 files changed, 10 insertions(+), 10 deletions(-) [+]
line wrap: on
line diff
--- a/paired_fastq_filtering.xml	Fri Jan 31 06:55:23 2020 -0500
+++ b/paired_fastq_filtering.xml	Mon Feb 03 06:44:58 2020 -0500
@@ -49,9 +49,9 @@
       </when>
     </conditional>
 
-    <param type="integer" name="cut_off" label="Quality cut-off" value="10" min="0" help="See below how to correctly set the quality cut-off" />
+    <param type="integer" name="cut_off" label="Quality cutoff" value="10" min="0" help="See below how to correctly set the quality cutoff" />
     <param type="integer" name="percent_above" label="Percent above cutoff" value="95" min="0"
-           help="Percentage of bases in the read that must have quality equal to or higher than the cut-off value" />
+           help="Percentage of bases in the read that must have quality equal to or higher than the cutoff value" />
 
     <conditional name="trimming">
       <param name="sequence_trimming" type="boolean" truevalue="true" falsevalue="false" checked="False" label="Trim reads"/>
@@ -147,13 +147,13 @@
 #. Sampling (optional)         
 #. Interlacing two fasta files
 
-**Quality setting cut-off**
+**Quality setting cutoff**
 
-To correctly set quality cut-off, you need to know how the quality is encoded in your fastq file, default
+To correctly set quality cutoff, you need to know how the quality is encoded in your fastq file, default
 filtering which is suitable for Sanger and Illumina 1.8 encoding is shown below::
 
 
-      Default filtering cut-off
+      Default filtering cutoff
                 |   
                 |
                 V
--- a/single_fastq_filtering.xml	Fri Jan 31 06:55:23 2020 -0500
+++ b/single_fastq_filtering.xml	Mon Feb 03 06:44:58 2020 -0500
@@ -46,9 +46,9 @@
       </when>
     </conditional>
 
-    <param type="integer" name="cut_off" label="Quality cut-off" value="10" min="0" help="See below how to correctly set the quality cut-off" />
+    <param type="integer" name="cut_off" label="Quality cutoff" value="10" min="0" help="See below how to correctly set the quality cutoff" />
     <param type="integer" name="percent_above" label="Percent above cutoff" value="95" min="0"
-           help="Percentage of bases in the read that must have quality equal to or higher than the cut-off value" />
+           help="Percentage of bases in the read that must have quality equal to or higher than the cutoff value" />
 
     <conditional name="trimming">
       <param name="sequence_trimming" type="boolean" truevalue="true" falsevalue="false" checked="False" label="Trim reads"/>
@@ -136,13 +136,13 @@
 #. Sampling (optional)         
 #. Interlacing two fasta files
 
-**Quality setting cut-off**
+**Quality setting cutoff**
 
-To correctly set quality cut-off, you need to know how the quality is encoded in your fastq file, default
+To correctly set quality cutoff, you need to know how the quality is encoded in your fastq file, default
 filtering which is suitable for Sanger and Illumina 1.8 encoding is shown below::
 
 
-      Default filtering cut-off
+      Default filtering cutoff
                 |   
                 |
                 V