Mercurial > repos > petr-novak > repeatexplorer2_testing
comparison repex_tarean.xml @ 5:397394c00bf7 draft
Uploaded
| author | petr-novak |
|---|---|
| date | Fri, 09 Apr 2021 08:09:53 +0000 |
| parents | 72c028e3e70e |
| children | 4b3af335dca8 |
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| 4:72c028e3e70e | 5:397394c00bf7 |
|---|---|
| 95 </param> | 95 </param> |
| 96 </conditional> | 96 </conditional> |
| 97 </when> | 97 </when> |
| 98 </conditional> | 98 </conditional> |
| 99 | 99 |
| 100 | 100 <conditional name="queue_definition"> |
| 101 <param name="queue_select" type="select" label="Select queue"> | |
| 102 <option value="basic_fast_queue">basic (max runtime 2 days, 4 GB RAM)</option> | |
| 103 <option value="long_slow_queue">long (max runtime 2 weeks, 64 GB RAM)</option> | |
| 104 <option value="extra_long_slow_queue">extra long (max runtime 4 weeks, 64 GB RAM)</option> | |
| 105 </param> | |
| 106 <when value="basic_fast_queue"> | |
| 107 <param name="queue_specification" type="text" label="Modify parameters (optional)" | |
| 108 value="-l select=1:ncpus=10:mem=32gb:scratch_local=50gb -l walltime=48:00:00 -q elixirre@pbs.elixir-czech.cz -v TAREAN_MAX_MEM=4000000,TAREAN_CPU=4" /> | |
| 109 </when> | |
| 110 | |
| 111 <when value="long_slow_queue"> | |
| 112 <param name="queue_specification" type="text" label="Modify parameters (optional)" | |
| 113 value="-l select=1:ncpus=16:mem=112gb:scratch_local=50gb -l walltime=336:00:00 -q elixirre@pbs.elixir-czech.cz -v TAREAN_MAX_MEM=64000000,TAREAN_CPU=15" /> | |
| 114 </when> | |
| 115 <when value="extra_long_slow_queue"> | |
| 116 <param name="queue_specification" type="text" label="Modify parameters (optional)" | |
| 117 value="-l select=1:ncpus=16:mem=112gb:scratch_local=50gb -l walltime=720:00:00 -q elixirre@pbs.elixir-czech.cz -v TAREAN_MAX_MEM=64000000,TAREAN_CPU=15" /> | |
| 118 </when> | |
| 119 </conditional> | |
| 120 | |
| 121 | |
| 101 | 122 |
| 102 </inputs> | 123 </inputs> |
| 103 <outputs> | 124 <outputs> |
| 104 <data name="log" format="txt" label="TAREAN log file"/> | 125 <data name="log" format="txt" label="TAREAN log file"/> |
| 105 <data name="ReportArchive" format="zip" label="TAREAN Archive with HTML report from data ${FastaFile.hid}"/> | 126 <data name="ReportArchive" format="zip" label="TAREAN Archive with HTML report from data ${FastaFile.hid}"/> |