Mercurial > repos > petr-novak > repeatexplorer2_testing

changeset 3:d1f67a13b70f draft

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Uploaded
author petr-novak
date Fri, 24 Jul 2020 07:32:09 -0400
parents 349b197133dc
children 72c028e3e70e
files repex_full_clustering.xml repex_tarean.xml tool_dependencies.xml
diffstat 3 files changed, 5 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/repex_full_clustering.xml	Fri Jul 24 07:26:59 2020 -0400
+++ b/repex_full_clustering.xml	Fri Jul 24 07:32:09 2020 -0400
@@ -1,4 +1,4 @@
-<tool id="repeatexplorer2" name="RepeatExplorer2 clustering: " version="2.3.8" >
+<tool id="repeatexplorer2_dev" name="RepeatExplorer2 clustering: " version="2.3.8" >
     <stdio>
       <regex match="lastdb: can't open file: NEAR" source="stderr" level="fatal" description="Version of last is too old, use ver 956 or higher\n" />
       <regex match="Traceback" source="stderr" level="fatal" description="Unknown error" />
@@ -34,7 +34,7 @@
      <requirement type="package">r-rsqlite</requirement>
      <requirement type="package">r-rserve</requirement>
      <requirement type="package">bioconductor-biostrings</requirement>
-     <requirement type="package" version="2.3.8">repex_tarean</requirement>
+     <requirement type="package" version="2.3.8">repex_tarean_dev</requirement>
      <requirement type="set_environment">REPEX</requirement>
      <requirement type="set_environment">REPEX_VERSION</requirement>
      <requirement type="package" version="0.9.1" >pyrserve</requirement>
--- a/repex_tarean.xml	Fri Jul 24 07:26:59 2020 -0400
+++ b/repex_tarean.xml	Fri Jul 24 07:32:09 2020 -0400
@@ -1,4 +1,4 @@
-<tool id="tarean" name="Tandem Repeat Analyzer"  version="2.3.8" >
+<tool id="tarean_dev" name="Tandem Repeat Analyzer"  version="2.3.8" >
     <stdio>
       <regex match="Traceback" source="stderr" level="fatal" description="Unknown error" />
       <regex match="error" source="stderr" level="fatal" description="Unknown error" />
@@ -28,7 +28,7 @@
       <requirement type="package">r-rsqlite</requirement>
       <requirement type="package">r-rserve</requirement>
       <requirement type="package">bioconductor-biostrings</requirement>
-      <requirement type="package" version="2.3.8">repex_tarean</requirement>
+      <requirement type="package" version="2.3.8">repex_tarean_dev</requirement>
       <requirement type="set_environment">REPEX</requirement>
       <requirement type="set_environment">REPEX_VERSION</requirement>
       <requirement type="package" version="0.9.1">pyrserve</requirement>
--- a/tool_dependencies.xml	Fri Jul 24 07:26:59 2020 -0400
+++ b/tool_dependencies.xml	Fri Jul 24 07:32:09 2020 -0400
@@ -1,6 +1,6 @@
 <?xml version="1.0" ?>
 <tool_dependency>
-    <package name="repex_tarean" version="2.3.8">
+    <package name="repex_tarean_dev" version="2.3.8">
         <repository changeset_revision="0bccba287857" name="package_repex_tarean_2_3_8" owner="petr-novak" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu"/>
         <readme>
       prepare repex database and scripts