Mercurial > repos > pieterlukasse > nist_wrapper
comparison nist_wrapper.xml @ 2:f6da901ffff8
jinja solution
| author | pieter.lukasse@wur.nl |
|---|---|
| date | Thu, 22 Jan 2015 16:55:19 +0100 |
| parents | cce6989ed423 |
| children | 910ebd2a6826 |
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| 1:964ec10d568c | 2:f6da901ffff8 |
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| 3 This part is a WORKAROUND for the wine X11 dependency, allowing it to run headless : | 3 This part is a WORKAROUND for the wine X11 dependency, allowing it to run headless : |
| 4 -> install Xvfb and enable it on a port, say 995: | 4 -> install Xvfb and enable it on a port, say 995: |
| 5 -> make sure this gets executed: export DISPLAY=:995; | 5 -> make sure this gets executed: export DISPLAY=:995; |
| 6 --> | 6 --> |
| 7 <description> Runs NIST's msseach program to match spectra against metabolite libraries</description> | 7 <description> Runs NIST's msseach program to match spectra against metabolite libraries</description> |
| 8 | |
| 9 <requirements> | |
| 10 <requirement name="package" version="0.2">nist_wrapper_venv</requirement> | |
| 11 </requirements> | |
| 12 | |
| 8 <command interpreter="export DISPLAY=:0; python"> | 13 <command interpreter="export DISPLAY=:0; python"> |
| 9 nist_wrapper.py | 14 nist_wrapper.py |
| 10 "~/.wine/drive_c/NIST" | 15 "~/.wine/drive_c/NIST" |
| 11 $nistIniFile | 16 $nistIniFile |
| 12 $spectraFile | 17 $spectraFile |