Mercurial > repos > pieterlukasse > nist_wrapper
changeset 2:f6da901ffff8
jinja solution
| author | pieter.lukasse@wur.nl |
|---|---|
| date | Thu, 22 Jan 2015 16:55:19 +0100 |
| parents | 964ec10d568c |
| children | 910ebd2a6826 |
| files | README.rst nist_wrapper.xml tool_dependencies.xml |
| diffstat | 3 files changed, 25 insertions(+), 1 deletions(-) [+] |
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--- a/README.rst Thu Jan 22 16:15:30 2015 +0100 +++ b/README.rst Thu Jan 22 16:55:19 2015 +0100 @@ -63,7 +63,7 @@ License for third party NIST tool/library -================================ +========================================= NIST 08 MS Library (demo) and MS Search v2.0f:
--- a/nist_wrapper.xml Thu Jan 22 16:15:30 2015 +0100 +++ b/nist_wrapper.xml Thu Jan 22 16:55:19 2015 +0100 @@ -5,6 +5,11 @@ -> make sure this gets executed: export DISPLAY=:995; --> <description> Runs NIST's msseach program to match spectra against metabolite libraries</description> + + <requirements> + <requirement name="package" version="0.2">nist_wrapper_venv</requirement> + </requirements> + <command interpreter="export DISPLAY=:0; python"> nist_wrapper.py "~/.wine/drive_c/NIST"
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Thu Jan 22 16:55:19 2015 +0100 @@ -0,0 +1,19 @@ +<?xml version="1.0"?> +<tool_dependency> + + <package name="nist_wrapper_venv" version="0.2"> + <install version="1.0"> + <actions> + + <action type="setup_virtualenv"> + jinja2==2.7.3 + six==1.7.2 + argparse==1.2.1 + </action> + + </actions> + </install> + <readme>A Python 2 virtual environment that includes the python packages jinja2, six, argparse.</readme> + </package> + +</tool_dependency> \ No newline at end of file