Mercurial > repos > pieterlukasse > primo_multiomics

PRIMO-multi-omics toolset & Galaxy wrappers
===========================================

Multi-omics module of Plant Research International's Mass Spectrometry (PRIMO) toolsuite.
This toolset consists of custom tools to facilitate post processing
and integration of different omics datasets.

Can be used in combination with PRIMS-proteomics (prims_proteomics package) and
with PRIMS-metabolomics (prims_metabolomics package).

Copyright 2010-2014 by Pieter Lukasse, Plant Research International (PRI),
Wageningen UR, The Netherlands. All rights reserved. See the license text below.

Galaxy wrappers and installation are available from the Galaxy Tool Shed at:
http://toolshed.g2.bx.psu.edu/view/pieterlukasse/primo_multiomics

History
=======

============== ======================================================================
Date            Changes
-------------- ----------------------------------------------------------------------
March 2015     * improvements release, refactored TermMapperTool (made this more
                 generic / multi-purpose lookup / cross-reference tool); added
                 support for quantification method in OntologyVis circles plot;
August 2014    * improvements release
May 2014       * first release via Tool Shed
============== ======================================================================

Tool Versioning
===============

PRIMO tools will have versions of the form X.Y.Z. Versions
differing only after the second decimal should be completely
compatible with each other. Breaking changes should result in an
increment of the number before and/or after the first decimal. All
tools of version less than 1.0.0 should be considered beta.


Bug Reports & other questions
=============================

For the time being issues can be reported via the contact form at:
http://www.wageningenur.nl/en/Persons/PNJ-Pieter-Lukasse.htm

Developers, Contributions & Collaborations
==========================================

If you wish to join forces and collaborate on some of the
tools do not hesitate to contact Pieter Lukasse via the contact form above.


License (Apache, Version 2.0)
=============================

Copyright 2013 Pieter Lukasse, Plant Research International (PRI).

Licensed under the Apache License, Version 2.0 (the "License");
you may not use this software except in compliance with the License.
You may obtain a copy of the License at

http://www.apache.org/licenses/LICENSE-2.0

Unless required by applicable law or agreed to in writing, software
distributed under the License is distributed on an "AS IS" BASIS,
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
See the License for the specific language governing permissions and
limitations under the License.
author	pieter.lukasse@wur.nl
date	Sat, 28 Mar 2015 14:28:45 +0100
parents	ce9228263148
children