Mercurial > repos > pieterlukasse > primo_multiomics
annotate README.rst @ 9:89264646e458
improvements release
| author | pieter.lukasse@wur.nl |
|---|---|
| date | Sat, 28 Mar 2015 14:28:45 +0100 |
| parents | ce9228263148 |
| children |
| rev | line source |
|---|---|
| 0 | 1 PRIMO-multi-omics toolset & Galaxy wrappers |
| 2 =========================================== | |
| 3 | |
| 4 Multi-omics module of Plant Research International's Mass Spectrometry (PRIMO) toolsuite. | |
| 5 This toolset consists of custom tools to facilitate post processing | |
| 6 and integration of different omics datasets. | |
| 7 | |
| 8 Can be used in combination with PRIMS-proteomics (prims_proteomics package) and | |
| 9 with PRIMS-metabolomics (prims_metabolomics package). | |
| 10 | |
| 11 Copyright 2010-2014 by Pieter Lukasse, Plant Research International (PRI), | |
|
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eb0b7889dd08
added more parameters/options and made Ontology observations file optional;
pieter.lukasse@wur.nl
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changeset
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12 Wageningen UR, The Netherlands. All rights reserved. See the license text below. |
| 0 | 13 |
| 14 Galaxy wrappers and installation are available from the Galaxy Tool Shed at: | |
| 15 http://toolshed.g2.bx.psu.edu/view/pieterlukasse/primo_multiomics | |
| 16 | |
| 17 History | |
| 18 ======= | |
| 19 | |
| 20 ============== ====================================================================== | |
| 21 Date Changes | |
| 22 -------------- ---------------------------------------------------------------------- | |
| 9 | 23 March 2015 * improvements release, refactored TermMapperTool (made this more |
| 24 generic / multi-purpose lookup / cross-reference tool); added | |
| 25 support for quantification method in OntologyVis circles plot; | |
| 7 | 26 August 2014 * improvements release |
| 0 | 27 May 2014 * first release via Tool Shed |
| 28 ============== ====================================================================== | |
| 29 | |
| 30 Tool Versioning | |
| 31 =============== | |
| 32 | |
| 33 PRIMO tools will have versions of the form X.Y.Z. Versions | |
| 34 differing only after the second decimal should be completely | |
| 35 compatible with each other. Breaking changes should result in an | |
| 36 increment of the number before and/or after the first decimal. All | |
| 37 tools of version less than 1.0.0 should be considered beta. | |
| 38 | |
| 39 | |
| 40 Bug Reports & other questions | |
| 41 ============================= | |
| 42 | |
| 43 For the time being issues can be reported via the contact form at: | |
| 44 http://www.wageningenur.nl/en/Persons/PNJ-Pieter-Lukasse.htm | |
| 45 | |
| 46 Developers, Contributions & Collaborations | |
| 47 ========================================== | |
| 48 | |
| 49 If you wish to join forces and collaborate on some of the | |
| 50 tools do not hesitate to contact Pieter Lukasse via the contact form above. | |
| 51 | |
| 52 | |
| 53 License (Apache, Version 2.0) | |
| 54 ============================= | |
| 55 | |
| 56 Copyright 2013 Pieter Lukasse, Plant Research International (PRI). | |
| 57 | |
| 58 Licensed under the Apache License, Version 2.0 (the "License"); | |
| 59 you may not use this software except in compliance with the License. | |
| 60 You may obtain a copy of the License at | |
| 61 | |
| 62 http://www.apache.org/licenses/LICENSE-2.0 | |
| 63 | |
| 64 Unless required by applicable law or agreed to in writing, software | |
| 65 distributed under the License is distributed on an "AS IS" BASIS, | |
| 66 WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. | |
| 67 See the License for the specific language governing permissions and | |
| 68 limitations under the License. | |
| 69 |