Mercurial > repos > pieterlukasse > prims_masscomb
annotate tool_dependencies.xml @ 13:c91d0d09cb0c default tip
fix in URL
author | pieter.lukasse@wur.nl |
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date | Wed, 18 Feb 2015 14:24:50 +0100 |
parents | 1a6fa343b981 |
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rev | line source |
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0 | 1 <?xml version="1.0"?> |
2 <tool_dependency> | |
3 <!-- see also http://wiki.galaxyproject.org/ToolShedToolFeatures for syntax help --> | |
4 <package name="xtandem" version="12.10011"> | |
5 <install version="1.0"> | |
6 <actions> | |
13 | 7 <action type="download_by_url">ftp://ftp.thegpm.org/projects/tandem/source/2012-10-01/tandem-linux-12-10-01-1.zip</action> |
0 | 8 <!--<action type="shell_command">make clean</action> |
9 <action type="shell_command">make</action>--> | |
10 <action type="move_directory_files"> | |
11 <source_directory>../tandem-linux-12-10-01-1</source_directory> | |
12 <destination_directory>$INSTALL_DIR/tandem-linux-12-10-01-1</destination_directory> | |
13 </action> | |
14 <action type="shell_command">chmod 755 $INSTALL_DIR/tandem-linux-12-10-01-1/bin/tandem.exe</action> | |
15 <!--<action type="chmod"><file mode="755">$INSTALL_DIR/tandem-linux-12-10-01-1/bin/tandem.exe</file><action>--> | |
16 <action type="set_environment"> | |
17 <environment_variable name="XTANDEM_12_10_01_PATH" action="set_to">$INSTALL_DIR/tandem-linux-12-10-01-1</environment_variable> | |
18 </action> | |
19 </actions> | |
20 </install> | |
21 <readme> | |
22 Ensures XTandem is installed. | |
23 </readme> | |
24 </package> | |
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1a6fa343b981
Adding auto install for proteowizard dependency
pieter.lukasse@wur.nl
parents:
0
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25 <package name="proteowizard" version="3.05622"> |
1a6fa343b981
Adding auto install for proteowizard dependency
pieter.lukasse@wur.nl
parents:
0
diff
changeset
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26 <install version="1.0"> |
1a6fa343b981
Adding auto install for proteowizard dependency
pieter.lukasse@wur.nl
parents:
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27 <actions> |
1a6fa343b981
Adding auto install for proteowizard dependency
pieter.lukasse@wur.nl
parents:
0
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28 <action type="download_by_url">http://toolshed.g2.bx.psu.edu/repos/pieterlukasse/prims_masscomb/raw-file/tip/pwiz-bin-linux-x86_64-gcc48-release-3_0_5622.tar.bz2</action> |
1a6fa343b981
Adding auto install for proteowizard dependency
pieter.lukasse@wur.nl
parents:
0
diff
changeset
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29 <action type="move_directory_files"> |
1a6fa343b981
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pieter.lukasse@wur.nl
parents:
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30 <source_directory>.</source_directory> |
1a6fa343b981
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parents:
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31 <destination_directory>$INSTALL_DIR/pwiz_3_0_5622</destination_directory> |
1a6fa343b981
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pieter.lukasse@wur.nl
parents:
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32 </action> |
1a6fa343b981
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pieter.lukasse@wur.nl
parents:
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33 <action type="set_environment"> |
1a6fa343b981
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pieter.lukasse@wur.nl
parents:
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34 <environment_variable name="PWIZ_3_0_5622_PATH" action="set_to">$INSTALL_DIR/pwiz_3_0_5622</environment_variable> |
1a6fa343b981
Adding auto install for proteowizard dependency
pieter.lukasse@wur.nl
parents:
0
diff
changeset
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35 </action> |
1a6fa343b981
Adding auto install for proteowizard dependency
pieter.lukasse@wur.nl
parents:
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36 </actions> |
1a6fa343b981
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pieter.lukasse@wur.nl
parents:
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37 </install> |
1a6fa343b981
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pieter.lukasse@wur.nl
parents:
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38 <readme> |
1a6fa343b981
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pieter.lukasse@wur.nl
parents:
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39 Ensures ProteoWizard binaries are installed. |
1a6fa343b981
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pieter.lukasse@wur.nl
parents:
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changeset
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40 </readme> |
1a6fa343b981
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pieter.lukasse@wur.nl
parents:
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diff
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41 </package> |
0 | 42 <set_environment version="1.0"> |
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1a6fa343b981
Adding auto install for proteowizard dependency
pieter.lukasse@wur.nl
parents:
0
diff
changeset
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43 <environment_variable name="PWIZ_3_0_5622_PATH" action="set_to">$INSTALL_DIR/pwiz_3_0_5622</environment_variable> |
0 | 44 </set_environment> |
45 </tool_dependency> |