Mercurial > repos > pieterlukasse > prims_masscomb
changeset 12:e38e97bc902d
added comment
| author | pieter.lukasse@wur.nl |
|---|---|
| date | Fri, 23 Jan 2015 15:45:50 +0100 |
| parents | 1a6fa343b981 |
| children | c91d0d09cb0c |
| files | masscomb_dbsearch_converter.xml |
| diffstat | 1 files changed, 6 insertions(+), 2 deletions(-) [+] |
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--- a/masscomb_dbsearch_converter.xml Fri Feb 07 15:55:38 2014 +0100 +++ b/masscomb_dbsearch_converter.xml Fri Jan 23 15:45:50 2015 +0100 @@ -45,7 +45,7 @@ <param name="inputFile" type="data" format="omx" label="MS/MS search results"/> </when> <when value="proteomediscoverer_pepxml"> - <param name="inputFile" type="data" format="pepxml" label="MS/MS search results (pepxml)"/> + <param name="inputFile" type="data" format="any" label="MS/MS search results (pepxml)"/> </when> </conditional> </when> @@ -70,7 +70,11 @@ </conditional> <param name="outputMsMsFragmentationData" type="boolean" checked="false" label="Output MS/MS fragmentation data" - help="NB: this will add to the output also the fragment ions related to each peptide identification"/> + help="NB: this will add to the output also the fragment ions related to each peptide identification. + NB2: Fragment ion annotation data is + inferred based on new calculations triggered by this conversion tool. + This is done because fragment ion annotation information is not present + in X!Tandem file (X!Tandem SLEDGEHAMMER (2013.09.01) and previous)"/> </inputs> <outputs>