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1 #peaks file
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2 # This file is generated by MACS version 2.1.0.20140616
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3 # Command line: callpeak -t /home/pjb/BCF_Work/galaxies/test/galaxy-dist/database/files/000/dataset_46.dat -c /home/pjb/BCF_Work/galaxies/test/galaxy-dist/database/files/000/dataset_45.dat --format=BED --name=test_MACS2.1.0 --bw=300 --gsize=775000000.0 --nomodel --extsize=243 --qvalue=0.05 -B --SPMR --mfold 5 50 --keep-dup 1
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4 # ARGUMENTS LIST:
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5 # name = test_MACS2.1.0
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6 # format = BED
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7 # ChIP-seq file = ['/home/pjb/BCF_Work/galaxies/test/galaxy-dist/database/files/000/dataset_46.dat']
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8 # control file = ['/home/pjb/BCF_Work/galaxies/test/galaxy-dist/database/files/000/dataset_45.dat']
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9 # effective genome size = 7.75e+08
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10 # band width = 300
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11 # model fold = [5, 50]
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12 # qvalue cutoff = 5.00e-02
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13 # Larger dataset will be scaled towards smaller dataset.
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14 # Range for calculating regional lambda is: 1000 bps and 10000 bps
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15 # Broad region calling is off
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16 # MACS will save fragment pileup signal per million reads
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17
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18 # tag size is determined as 50 bps
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19 # total tags in treatment: 50
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20 # tags after filtering in treatment: 50
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21 # maximum duplicate tags at the same position in treatment = 1
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22 # Redundant rate in treatment: 0.00
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23 # total tags in control: 50
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24 # tags after filtering in control: 50
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25 # maximum duplicate tags at the same position in control = 1
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26 # Redundant rate in control: 0.00
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27 # d = 243
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28 #chr start end length abs_summit pileup -log10(pvalue) fold_enrichment -log10(qvalue) name
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29 chr26 4118914 4119282 369 4119130 9.00 9.13132 6.31632 2.51561 test_MACS2.1.0_peak_1
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