Mercurial > repos > pjbriggs > rnachipintegrator

comparison tool_dependencies.xml @ 1:5f69a2c1b9c9 draft

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Uploaded version 1.0.0.0.
author pjbriggs
date Wed, 24 Feb 2016 09:39:14 -0500
parents d9c1f2133124
children dc498b03ca9a
comparison
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0:d9c1f2133124 1:5f69a2c1b9c9
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="python_xlwt" version="0.7.5"> 3 <package name="python_xlsxwriter" version="0.8.4">
4 <install version="1.0"> 4 <install version="1.0">
5 <actions> 5 <actions>
6 <action type="download_by_url">https://pypi.python.org/packages/source/x/xlwt/xlwt-0.7.5.tar.gz</action> 6 <action type="download_by_url">https://pypi.python.org/packages/source/X/XlsxWriter/XlsxWriter-0.8.4.tar.gz</action>
7 <action type="make_directory">$INSTALL_DIR/lib/python</action> 7 <action type="make_directory">$INSTALL_DIR/lib/python</action>
8 <action type="shell_command"> 8 <action type="shell_command">
9 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp; 9 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;
10 python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin 10 python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin
11 </action> 11 </action>
13 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> 13 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
14 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> 14 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
15 </action> 15 </action>
16 </actions> 16 </actions>
17 </install> 17 </install>
18 <readme>Installs Python module xlwt 0.7.5</readme> 18 <readme>Installs Python module XlsxWriter 0.8.4</readme>
19 </package> 19 </package>
20 <package name="python_xlrd" version="0.9.3"> 20 <package name="rnachipintegrator" version="1.0.0">
21 <install version="1.0"> 21 <install version="1.0">
22 <actions> 22 <actions>
23 <action type="download_by_url">https://pypi.python.org/packages/source/x/xlrd/xlrd-0.9.3.tar.gz</action> 23 <action type="download_by_url">https://pypi.python.org/packages/source/R/RnaChipIntegrator/RnaChipIntegrator-1.0.0.tar.gz</action>
24 <action type="make_directory">$INSTALL_DIR/lib/python</action>
25 <action type="shell_command"> 24 <action type="shell_command">
26 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp; 25 pip install --no-use-wheel --install-option "--prefix=$INSTALL_DIR" .
27 python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin
28 </action>
29 <action type="set_environment">
30 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
31 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
32 </action>
33 </actions>
34 </install>
35 <readme>Installs Python module xlrd 0.9.3</readme>
36 </package>
37 <package name="python_xlutils" version="1.7.1">
38 <install version="1.0">
39 <actions>
40 <action type="download_by_url">https://pypi.python.org/packages/source/x/xlutils/xlutils-1.7.1.tar.gz</action>
41 <action type="make_directory">$INSTALL_DIR/lib/python</action>
42 <action type="shell_command">
43 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;
44 python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin
45 </action>
46 <action type="set_environment">
47 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
48 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
49 </action>
50 </actions>
51 </install>
52 <readme>Installs Python module xlutils 1.7.1</readme>
53 </package>
54 <package name="rnachipintegrator" version="0.4.4">
55 <install version="1.0">
56 <actions>
57 <action type="download_by_url">https://github.com/fls-bioinformatics-core/RnaChipIntegrator/archive/v0.4.4.tar.gz</action>
58 <action type="move_file">
59 <source>RnaChipIntegrator.py</source>
60 <destination>$INSTALL_DIR</destination>
61 </action>
62 <action type="move_file">
63 <source>Spreadsheet.py</source>
64 <destination>$INSTALL_DIR</destination>
65 </action> 26 </action>
66 <action type="set_environment"> 27 <action type="set_environment">
67 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable> 28 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
68 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable> 29 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python2.7/site-packages</environment_variable>
69 </action> 30 </action>
70 </actions> 31 </actions>
71 </install> 32 </install>
72 <readme>Installs RnaChipIntegrator 0.4.3</readme> 33 <readme>Installs RnaChipIntegrator 1.0.0 from PyPI</readme>
73 </package> 34 </package>
74 </tool_dependency> 35 </tool_dependency>