Mercurial > repos > pjbriggs > rnachipintegrator
diff tool_dependencies.xml @ 1:5f69a2c1b9c9 draft
Uploaded version 1.0.0.0.
| author | pjbriggs |
|---|---|
| date | Wed, 24 Feb 2016 09:39:14 -0500 |
| parents | d9c1f2133124 |
| children | dc498b03ca9a |
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--- a/tool_dependencies.xml Tue Jun 30 06:44:06 2015 -0400 +++ b/tool_dependencies.xml Wed Feb 24 09:39:14 2016 -0500 @@ -1,26 +1,9 @@ <?xml version="1.0"?> <tool_dependency> - <package name="python_xlwt" version="0.7.5"> + <package name="python_xlsxwriter" version="0.8.4"> <install version="1.0"> <actions> - <action type="download_by_url">https://pypi.python.org/packages/source/x/xlwt/xlwt-0.7.5.tar.gz</action> - <action type="make_directory">$INSTALL_DIR/lib/python</action> - <action type="shell_command"> - export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python && - python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin - </action> - <action type="set_environment"> - <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> - <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> - </action> - </actions> - </install> - <readme>Installs Python module xlwt 0.7.5</readme> - </package> - <package name="python_xlrd" version="0.9.3"> - <install version="1.0"> - <actions> - <action type="download_by_url">https://pypi.python.org/packages/source/x/xlrd/xlrd-0.9.3.tar.gz</action> + <action type="download_by_url">https://pypi.python.org/packages/source/X/XlsxWriter/XlsxWriter-0.8.4.tar.gz</action> <action type="make_directory">$INSTALL_DIR/lib/python</action> <action type="shell_command"> export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python && @@ -32,43 +15,21 @@ </action> </actions> </install> - <readme>Installs Python module xlrd 0.9.3</readme> + <readme>Installs Python module XlsxWriter 0.8.4</readme> </package> - <package name="python_xlutils" version="1.7.1"> + <package name="rnachipintegrator" version="1.0.0"> <install version="1.0"> <actions> - <action type="download_by_url">https://pypi.python.org/packages/source/x/xlutils/xlutils-1.7.1.tar.gz</action> - <action type="make_directory">$INSTALL_DIR/lib/python</action> + <action type="download_by_url">https://pypi.python.org/packages/source/R/RnaChipIntegrator/RnaChipIntegrator-1.0.0.tar.gz</action> <action type="shell_command"> - export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python && - python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin - </action> - <action type="set_environment"> - <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> - <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> - </action> - </actions> - </install> - <readme>Installs Python module xlutils 1.7.1</readme> - </package> - <package name="rnachipintegrator" version="0.4.4"> - <install version="1.0"> - <actions> - <action type="download_by_url">https://github.com/fls-bioinformatics-core/RnaChipIntegrator/archive/v0.4.4.tar.gz</action> - <action type="move_file"> - <source>RnaChipIntegrator.py</source> - <destination>$INSTALL_DIR</destination> - </action> - <action type="move_file"> - <source>Spreadsheet.py</source> - <destination>$INSTALL_DIR</destination> + pip install --no-use-wheel --install-option "--prefix=$INSTALL_DIR" . </action> <action type="set_environment"> - <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable> - <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable> + <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> + <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python2.7/site-packages</environment_variable> </action> </actions> </install> - <readme>Installs RnaChipIntegrator 0.4.3</readme> + <readme>Installs RnaChipIntegrator 1.0.0 from PyPI</readme> </package> </tool_dependency>