Mercurial > repos > pjbriggs > trimmomatic
comparison trimmomatic_macros.xml @ 17:b9aaed85cbd1 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/packages/trimmomatic commit 6151dc895107d028c525362fb16b91388e10f2f2
| author | iuc |
|---|---|
| date | Wed, 24 Jan 2024 08:56:01 +0000 |
| parents | 9a38087e3bfd |
| children |
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| 16:9a38087e3bfd | 17:b9aaed85cbd1 |
|---|---|
| 4 Based on https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/snpsift/snpSift_macros.xml#L13 | 4 Based on https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/snpsift/snpSift_macros.xml#L13 |
| 5 --> | 5 --> |
| 6 <token name="@CONDA_TRIMMOMATIC_JAR_PATH@">if [ -z "\$TRIMMOMATIC_JAR_PATH" ]; then export TRIMMOMATIC_JAR_PATH=\$(dirname \$(readlink -e \$(which trimmomatic))); fi</token> | 6 <token name="@CONDA_TRIMMOMATIC_JAR_PATH@">if [ -z "\$TRIMMOMATIC_JAR_PATH" ]; then export TRIMMOMATIC_JAR_PATH=\$(dirname \$(readlink -e \$(which trimmomatic))); fi</token> |
| 7 <token name="@CONDA_TRIMMOMATIC_ADAPTERS_PATH@">if [ -z "\$TRIMMOMATIC_ADAPTERS_PATH" ]; then export TRIMMOMATIC_ADAPTERS_PATH=\$(dirname \$(readlink -e \$(which trimmomatic)))/adapters; fi</token> | 7 <token name="@CONDA_TRIMMOMATIC_ADAPTERS_PATH@">if [ -z "\$TRIMMOMATIC_ADAPTERS_PATH" ]; then export TRIMMOMATIC_ADAPTERS_PATH=\$(dirname \$(readlink -e \$(which trimmomatic)))/adapters; fi</token> |
| 8 <token name="@TOOL_VERSION@">0.39</token> | 8 <token name="@TOOL_VERSION@">0.39</token> |
| 9 <token name="@VERSION_SUFFIX@">1</token> | 9 <token name="@VERSION_SUFFIX@">2</token> |
| 10 </macros> | 10 </macros> |