Mercurial > repos > pjbriggs > weeder2
diff tool-data/weeder2.loc.sample @ 2:3c5f10f7dd40 draft
Updated to tool version 2.0.1 (use data table to locate freqfiles).
| author | pjbriggs |
|---|---|
| date | Fri, 27 Nov 2015 11:06:28 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool-data/weeder2.loc.sample Fri Nov 27 11:06:28 2015 -0500 @@ -0,0 +1,35 @@ +# This is a sample file distributed with Galaxy that is used by the +# weeder2 tool to find the frequency files. +# +# The weeder.loc file has this format (white space characters are TAB +# characters): +# +#<species_code> <Description> <PathToFreqFilesDir> +# +# <PathToFreqFilesDir> should be a period ('.') to indicate the +# frequency files that come as standard with weeder2; otherwise +# it should be the full path to the directory holding a custom +# set of .freq files. +# +# For example: +# +#AF Aspergillus fumigatus (AF) /home/galaxy/weeder/FreqFiles +# +# where '/home/galaxy/weeder/FreqFiles' would contain: +# +#-rw-rw-r-- 1 pjb pjb 20109718 Oct 23 13:16 AF_ds.10.freq +#-rw-rw-r-- 1 pjb pjb 47080 Oct 23 13:15 AF_ds.6.freq +#-rw-rw-r-- 1 pjb pjb 1006374 Oct 23 13:15 AF_ds.8.freq +#-rw-rw-r-- 1 pjb pjb 19930169 Oct 23 13:16 AF_ss.10.freq +#-rw-rw-r-- 1 pjb pjb 45262 Oct 23 13:16 AF_ss.6.freq +#-rw-rw-r-- 1 pjb pjb 984583 Oct 23 13:16 AF_ss.8.freq +# +# Entries are already provided for the standard frequency files that +# are distributed with Weeder2. +# This file should be placed in galaxy's tool-data directory when the +# weeder2 tool is installed. +HS Homo sapiens (HS) . +MM Mus musculus (MM) . +DM Drosophila melanogaster (DM) . +SC Saccharomyces cerevisiae (SC) . +AT Arabidopsis thaliana (AT) .