Mercurial > repos > pjbriggs > weeder2
annotate tool-data/weeder2.loc.sample @ 2:3c5f10f7dd40 draft
Updated to tool version 2.0.1 (use data table to locate freqfiles).
author | pjbriggs |
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date | Fri, 27 Nov 2015 11:06:28 -0500 |
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3c5f10f7dd40
Updated to tool version 2.0.1 (use data table to locate freqfiles).
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1 # This is a sample file distributed with Galaxy that is used by the |
3c5f10f7dd40
Updated to tool version 2.0.1 (use data table to locate freqfiles).
pjbriggs
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2 # weeder2 tool to find the frequency files. |
3c5f10f7dd40
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3 # |
3c5f10f7dd40
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4 # The weeder.loc file has this format (white space characters are TAB |
3c5f10f7dd40
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pjbriggs
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5 # characters): |
3c5f10f7dd40
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6 # |
3c5f10f7dd40
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7 #<species_code> <Description> <PathToFreqFilesDir> |
3c5f10f7dd40
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8 # |
3c5f10f7dd40
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pjbriggs
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9 # <PathToFreqFilesDir> should be a period ('.') to indicate the |
3c5f10f7dd40
Updated to tool version 2.0.1 (use data table to locate freqfiles).
pjbriggs
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10 # frequency files that come as standard with weeder2; otherwise |
3c5f10f7dd40
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pjbriggs
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11 # it should be the full path to the directory holding a custom |
3c5f10f7dd40
Updated to tool version 2.0.1 (use data table to locate freqfiles).
pjbriggs
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12 # set of .freq files. |
3c5f10f7dd40
Updated to tool version 2.0.1 (use data table to locate freqfiles).
pjbriggs
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13 # |
3c5f10f7dd40
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14 # For example: |
3c5f10f7dd40
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15 # |
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16 #AF Aspergillus fumigatus (AF) /home/galaxy/weeder/FreqFiles |
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17 # |
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18 # where '/home/galaxy/weeder/FreqFiles' would contain: |
3c5f10f7dd40
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pjbriggs
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19 # |
3c5f10f7dd40
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20 #-rw-rw-r-- 1 pjb pjb 20109718 Oct 23 13:16 AF_ds.10.freq |
3c5f10f7dd40
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21 #-rw-rw-r-- 1 pjb pjb 47080 Oct 23 13:15 AF_ds.6.freq |
3c5f10f7dd40
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22 #-rw-rw-r-- 1 pjb pjb 1006374 Oct 23 13:15 AF_ds.8.freq |
3c5f10f7dd40
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23 #-rw-rw-r-- 1 pjb pjb 19930169 Oct 23 13:16 AF_ss.10.freq |
3c5f10f7dd40
Updated to tool version 2.0.1 (use data table to locate freqfiles).
pjbriggs
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24 #-rw-rw-r-- 1 pjb pjb 45262 Oct 23 13:16 AF_ss.6.freq |
3c5f10f7dd40
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pjbriggs
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25 #-rw-rw-r-- 1 pjb pjb 984583 Oct 23 13:16 AF_ss.8.freq |
3c5f10f7dd40
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pjbriggs
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26 # |
3c5f10f7dd40
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27 # Entries are already provided for the standard frequency files that |
3c5f10f7dd40
Updated to tool version 2.0.1 (use data table to locate freqfiles).
pjbriggs
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28 # are distributed with Weeder2. |
3c5f10f7dd40
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pjbriggs
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29 # This file should be placed in galaxy's tool-data directory when the |
3c5f10f7dd40
Updated to tool version 2.0.1 (use data table to locate freqfiles).
pjbriggs
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30 # weeder2 tool is installed. |
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31 HS Homo sapiens (HS) . |
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32 MM Mus musculus (MM) . |
3c5f10f7dd40
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33 DM Drosophila melanogaster (DM) . |
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34 SC Saccharomyces cerevisiae (SC) . |
3c5f10f7dd40
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35 AT Arabidopsis thaliana (AT) . |