Mercurial > repos > portiahollyoak > breakdancer_max

annotate test-data/README @ 1:021a0f7ab3f6 draft

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planemo upload for repository https://github.com/portiahollyoak/Tools commit 41388a30836a24988ff78645b9446480c1c59990
author portiahollyoak
date Fri, 20 May 2016 04:56:25 -0400
parents f65530d07350
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f65530d07350 planemo upload for repository https://github.com/portiahollyoak/Tools commit 1f1c277219ca756c9baa453592b455597fd593d8-dirty
portiahollyoak
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1 This is a collection of test data to be used with breakdancer. It consists of:
f65530d07350 planemo upload for repository https://github.com/portiahollyoak/Tools commit 1f1c277219ca756c9baa453592b455597fd593d8-dirty
portiahollyoak
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f65530d07350 planemo upload for repository https://github.com/portiahollyoak/Tools commit 1f1c277219ca756c9baa453592b455597fd593d8-dirty
portiahollyoak
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3 an alignment file
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021a0f7ab3f6 planemo upload for repository https://github.com/portiahollyoak/Tools commit 41388a30836a24988ff78645b9446480c1c59990
portiahollyoak
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4 an output bed file
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f65530d07350 planemo upload for repository https://github.com/portiahollyoak/Tools commit 1f1c277219ca756c9baa453592b455597fd593d8-dirty
portiahollyoak
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5
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021a0f7ab3f6 planemo upload for repository https://github.com/portiahollyoak/Tools commit 41388a30836a24988ff78645b9446480c1c59990
portiahollyoak
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6 The input variables for the alignment file to be put into breakdancer are:
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f65530d07350 planemo upload for repository https://github.com/portiahollyoak/Tools commit 1f1c277219ca756c9baa453592b455597fd593d8-dirty
portiahollyoak
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7 mean:227
f65530d07350 planemo upload for repository https://github.com/portiahollyoak/Tools commit 1f1c277219ca756c9baa453592b455597fd593d8-dirty
portiahollyoak
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8 standard deviation:98
f65530d07350 planemo upload for repository https://github.com/portiahollyoak/Tools commit 1f1c277219ca756c9baa453592b455597fd593d8-dirty
portiahollyoak
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9 read length:125
f65530d07350 planemo upload for repository https://github.com/portiahollyoak/Tools commit 1f1c277219ca756c9baa453592b455597fd593d8-dirty
portiahollyoak
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10 sample:X_10000000_Hum1
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021a0f7ab3f6 planemo upload for repository https://github.com/portiahollyoak/Tools commit 41388a30836a24988ff78645b9446480c1c59990
portiahollyoak
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021a0f7ab3f6 planemo upload for repository https://github.com/portiahollyoak/Tools commit 41388a30836a24988ff78645b9446480c1c59990
portiahollyoak
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12 All other variables are to be kept as defaults.