Mercurial > repos > portiahollyoak > breakdancer_max

annotate test-data/README @ 7:0f04e379591b draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/portiahollyoak/Tools commit 2eab7c96a59ba8b26adba3cd3ca9c6a5cea67aad
author portiahollyoak
date Wed, 08 Jun 2016 05:01:41 -0400
parents 021a0f7ab3f6
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
f65530d07350 planemo upload for repository https://github.com/portiahollyoak/Tools commit 1f1c277219ca756c9baa453592b455597fd593d8-dirty
portiahollyoak
parents:
diff changeset
1 This is a collection of test data to be used with breakdancer. It consists of:
f65530d07350 planemo upload for repository https://github.com/portiahollyoak/Tools commit 1f1c277219ca756c9baa453592b455597fd593d8-dirty
portiahollyoak
parents:
diff changeset
2
f65530d07350 planemo upload for repository https://github.com/portiahollyoak/Tools commit 1f1c277219ca756c9baa453592b455597fd593d8-dirty
portiahollyoak
parents:
diff changeset
3 an alignment file
1
021a0f7ab3f6 planemo upload for repository https://github.com/portiahollyoak/Tools commit 41388a30836a24988ff78645b9446480c1c59990
portiahollyoak
parents: 0
diff changeset
4 an output bed file
0
f65530d07350 planemo upload for repository https://github.com/portiahollyoak/Tools commit 1f1c277219ca756c9baa453592b455597fd593d8-dirty
portiahollyoak
parents:
diff changeset
5
1
021a0f7ab3f6 planemo upload for repository https://github.com/portiahollyoak/Tools commit 41388a30836a24988ff78645b9446480c1c59990
portiahollyoak
parents: 0
diff changeset
6 The input variables for the alignment file to be put into breakdancer are:
0
f65530d07350 planemo upload for repository https://github.com/portiahollyoak/Tools commit 1f1c277219ca756c9baa453592b455597fd593d8-dirty
portiahollyoak
parents:
diff changeset
7 mean:227
f65530d07350 planemo upload for repository https://github.com/portiahollyoak/Tools commit 1f1c277219ca756c9baa453592b455597fd593d8-dirty
portiahollyoak
parents:
diff changeset
8 standard deviation:98
f65530d07350 planemo upload for repository https://github.com/portiahollyoak/Tools commit 1f1c277219ca756c9baa453592b455597fd593d8-dirty
portiahollyoak
parents:
diff changeset
9 read length:125
f65530d07350 planemo upload for repository https://github.com/portiahollyoak/Tools commit 1f1c277219ca756c9baa453592b455597fd593d8-dirty
portiahollyoak
parents:
diff changeset
10 sample:X_10000000_Hum1
1
021a0f7ab3f6 planemo upload for repository https://github.com/portiahollyoak/Tools commit 41388a30836a24988ff78645b9446480c1c59990
portiahollyoak
parents: 0
diff changeset
11
021a0f7ab3f6 planemo upload for repository https://github.com/portiahollyoak/Tools commit 41388a30836a24988ff78645b9446480c1c59990
portiahollyoak
parents: 0
diff changeset
12 All other variables are to be kept as defaults.