Mercurial > repos > portiahollyoak > temp
annotate test-data/README @ 11:e19d9742c99b draft
planemo upload for repository https://github.com/portiahollyoak/Tools commit bfcc36291d97d1c0986f034ca1a03433e8299ff2-dirty
author | portiahollyoak |
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date | Thu, 28 Apr 2016 07:57:12 -0400 |
parents | 28d1a6f8143f |
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28d1a6f8143f
planemo upload for repository https://github.com/portiahollyoak/Tools commit 132bb96bba8e7aed66a102ed93b7744f36d10d37-dirty
portiahollyoak
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1 This is a small simulated dataset for testing if TEMP is properly installed and demonstrating how it works. |
28d1a6f8143f
planemo upload for repository https://github.com/portiahollyoak/Tools commit 132bb96bba8e7aed66a102ed93b7744f36d10d37-dirty
portiahollyoak
parents:
diff
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2 |
28d1a6f8143f
planemo upload for repository https://github.com/portiahollyoak/Tools commit 132bb96bba8e7aed66a102ed93b7744f36d10d37-dirty
portiahollyoak
parents:
diff
changeset
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3 10 TE insertions and 5 TE excisions were generated in the chr2L:2000000-3000000 region of the Drosophila Melanogaster Reference Genome (dm3), and pair-end Illumina reads were simulated with insert size 500, read length 90 and error-rate of 0.0005. Those reads were mapped to the dm3 reference genome and the alignments were in the file "test_chromosome.sorted.bam". |
28d1a6f8143f
planemo upload for repository https://github.com/portiahollyoak/Tools commit 132bb96bba8e7aed66a102ed93b7744f36d10d37-dirty
portiahollyoak
parents:
diff
changeset
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4 |
28d1a6f8143f
planemo upload for repository https://github.com/portiahollyoak/Tools commit 132bb96bba8e7aed66a102ed93b7744f36d10d37-dirty
portiahollyoak
parents:
diff
changeset
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5 The 10 simulated insertions and 5 excisions were listed in the file "test_chromosome.sites". |
28d1a6f8143f
planemo upload for repository https://github.com/portiahollyoak/Tools commit 132bb96bba8e7aed66a102ed93b7744f36d10d37-dirty
portiahollyoak
parents:
diff
changeset
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6 The concensus sequences for those 10 TEs were in the file "test_concensus.fa". |
28d1a6f8143f
planemo upload for repository https://github.com/portiahollyoak/Tools commit 132bb96bba8e7aed66a102ed93b7744f36d10d37-dirty
portiahollyoak
parents:
diff
changeset
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7 The annotated TE insertions in the reference genome were listed in the file "test_TE_annotation.bed". |