annotate mixomics_plotvar.xml @ 2:c8533e9298e5 draft

"planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 8cb5630238352459037b3647eebfabb5554566f6-dirty"
author ppericard
date Fri, 23 Oct 2020 10:15:56 +0000
parents e93350dc99f1
children d4e9f7546dfa
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
2
c8533e9298e5 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 8cb5630238352459037b3647eebfabb5554566f6-dirty"
ppericard
parents: 1
diff changeset
1 <tool id="mixomics_plotvar" name="mixOmics plotVar" version="@TOOL_VERSION@+galaxy1" profile="16.04" workflow_compatible="true">
0
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
2
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
3 <description>provides variables representation for (regularized) CCA, (sparse) PLS regression, PCA and (sparse) Regularized generalised CCA</description>
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
4
2
c8533e9298e5 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 8cb5630238352459037b3647eebfabb5554566f6-dirty"
ppericard
parents: 1
diff changeset
5 <macros>
c8533e9298e5 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 8cb5630238352459037b3647eebfabb5554566f6-dirty"
ppericard
parents: 1
diff changeset
6 <import>macros.xml</import>
c8533e9298e5 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 8cb5630238352459037b3647eebfabb5554566f6-dirty"
ppericard
parents: 1
diff changeset
7 <import>macros_mixomics.xml</import>
c8533e9298e5 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 8cb5630238352459037b3647eebfabb5554566f6-dirty"
ppericard
parents: 1
diff changeset
8 </macros>
0
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
9
2
c8533e9298e5 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 8cb5630238352459037b3647eebfabb5554566f6-dirty"
ppericard
parents: 1
diff changeset
10 <expand macro="requirements"/>
c8533e9298e5 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 8cb5630238352459037b3647eebfabb5554566f6-dirty"
ppericard
parents: 1
diff changeset
11 <expand macro="stdio"/>
c8533e9298e5 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 8cb5630238352459037b3647eebfabb5554566f6-dirty"
ppericard
parents: 1
diff changeset
12
c8533e9298e5 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 8cb5630238352459037b3647eebfabb5554566f6-dirty"
ppericard
parents: 1
diff changeset
13 <command detect_errors="aggressive"><![CDATA[
0
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
14
2
c8533e9298e5 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 8cb5630238352459037b3647eebfabb5554566f6-dirty"
ppericard
parents: 1
diff changeset
15 @COMMAND_RSCRIPT@/mixomics_plotvar.R
c8533e9298e5 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 8cb5630238352459037b3647eebfabb5554566f6-dirty"
ppericard
parents: 1
diff changeset
16
0
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
17 --input_rdata $input_rdata
2
c8533e9298e5 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 8cb5630238352459037b3647eebfabb5554566f6-dirty"
ppericard
parents: 1
diff changeset
18
0
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
19 $adv.legend
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
20 --cutoff $adv.cutoff
2
c8533e9298e5 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 8cb5630238352459037b3647eebfabb5554566f6-dirty"
ppericard
parents: 1
diff changeset
21
0
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
22 --output_pdf $output_pdf
2
c8533e9298e5 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 8cb5630238352459037b3647eebfabb5554566f6-dirty"
ppericard
parents: 1
diff changeset
23
c8533e9298e5 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 8cb5630238352459037b3647eebfabb5554566f6-dirty"
ppericard
parents: 1
diff changeset
24 @COMMAND_LOG_EXIT@
c8533e9298e5 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 8cb5630238352459037b3647eebfabb5554566f6-dirty"
ppericard
parents: 1
diff changeset
25
c8533e9298e5 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 8cb5630238352459037b3647eebfabb5554566f6-dirty"
ppericard
parents: 1
diff changeset
26 ]]></command>
0
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
27
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
28 <inputs>
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
29 <param name="input_rdata" type="data" format="rdata"
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
30 label="Input RData file from (sparse)(I)PCA, (regularized)CCA, (sparse)PLS(DA) or (sparse)(R)GCCA(DA)"
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
31 help="This is the RData output file from the block.splsda function." />
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
32 <section name="adv" title="Advanced Options" expanded="false">
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
33 <param name="legend" type="boolean" checked="true" truevalue="--legend" falsevalue=""
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
34 label="Plot legend" />
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
35 <param name="cutoff" type="float" value="0" min="0" max="1"
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
36 label="Cut-off"
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
37 help="Only selected variables whose correlation with the first or second axis is greater than Cut-off in absolute value will be plotted." />
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
38 </section>
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
39 </inputs>
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
40
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
41 <outputs>
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
42 <data name="output_pdf" format="pdf" label="plotVar.pdf" />
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
43 </outputs>
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
44
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
45 <tests>
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
46 <test>
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
47 <param name="input_rdata" value="out_rdata.rdata" />
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
48 <output name="output_pdf" value="out_plotVar.pdf" />
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
49 </test>
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
50 </tests>
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
51
2
c8533e9298e5 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 8cb5630238352459037b3647eebfabb5554566f6-dirty"
ppericard
parents: 1
diff changeset
52 <help><![CDATA[
0
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
53
2
c8533e9298e5 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 8cb5630238352459037b3647eebfabb5554566f6-dirty"
ppericard
parents: 1
diff changeset
54 @HELP_AUTHORS@
0
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
55
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
56 ================
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
57 mixOmics plotVar
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
58 ================
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
59
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
60 -----------
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
61 Description
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
62 -----------
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
63
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
64 The plotVar function is part of the mixOmics package for exploration and integration of Omics datasets.
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
65 Provides variables representation for (regularized) CCA, (sparse) PLS regression, PCA and (sparse) Regularized generalised CCA.
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
66
2
c8533e9298e5 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 8cb5630238352459037b3647eebfabb5554566f6-dirty"
ppericard
parents: 1
diff changeset
67 -----------------
c8533e9298e5 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 8cb5630238352459037b3647eebfabb5554566f6-dirty"
ppericard
parents: 1
diff changeset
68 Workflow position
c8533e9298e5 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 8cb5630238352459037b3647eebfabb5554566f6-dirty"
ppericard
parents: 1
diff changeset
69 -----------------
c8533e9298e5 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 8cb5630238352459037b3647eebfabb5554566f6-dirty"
ppericard
parents: 1
diff changeset
70
c8533e9298e5 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 8cb5630238352459037b3647eebfabb5554566f6-dirty"
ppericard
parents: 1
diff changeset
71 **Upstream tools**
c8533e9298e5 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 8cb5630238352459037b3647eebfabb5554566f6-dirty"
ppericard
parents: 1
diff changeset
72
c8533e9298e5 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 8cb5630238352459037b3647eebfabb5554566f6-dirty"
ppericard
parents: 1
diff changeset
73 ======================= =================================== ========
c8533e9298e5 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 8cb5630238352459037b3647eebfabb5554566f6-dirty"
ppericard
parents: 1
diff changeset
74 Name Output file Format
c8533e9298e5 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 8cb5630238352459037b3647eebfabb5554566f6-dirty"
ppericard
parents: 1
diff changeset
75 ======================= =================================== ========
c8533e9298e5 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 8cb5630238352459037b3647eebfabb5554566f6-dirty"
ppericard
parents: 1
diff changeset
76 mixOmics.block.splsda mixomics_blocksplsda_output.RData rdata
c8533e9298e5 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 8cb5630238352459037b3647eebfabb5554566f6-dirty"
ppericard
parents: 1
diff changeset
77 ======================= =================================== ========
c8533e9298e5 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 8cb5630238352459037b3647eebfabb5554566f6-dirty"
ppericard
parents: 1
diff changeset
78
c8533e9298e5 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 8cb5630238352459037b3647eebfabb5554566f6-dirty"
ppericard
parents: 1
diff changeset
79 ---------------------------------------------------
c8533e9298e5 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 8cb5630238352459037b3647eebfabb5554566f6-dirty"
ppericard
parents: 1
diff changeset
80
0
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
81 -----------
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
82 Input files
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
83 -----------
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
84
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
85 +-------------------------------+------------+
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
86 | Parameter : num + label | Format |
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
87 +===============================+============+
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
88 | 1 : Rdata block.splsda output | Rdata |
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
89 +-------------------------------+------------+
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
90
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
91 ----------
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
92 Parameters
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
93 ----------
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
94
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
95 Advanced options:
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
96 =================
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
97
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
98 Plot legend
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
99
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
100 Cut-off
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
101
2
c8533e9298e5 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 8cb5630238352459037b3647eebfabb5554566f6-dirty"
ppericard
parents: 1
diff changeset
102
c8533e9298e5 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 8cb5630238352459037b3647eebfabb5554566f6-dirty"
ppericard
parents: 1
diff changeset
103 @HELP_MANUAL@
c8533e9298e5 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 8cb5630238352459037b3647eebfabb5554566f6-dirty"
ppericard
parents: 1
diff changeset
104
0
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
105 ------------
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
106 Output files
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
107 ------------
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
108
2
c8533e9298e5 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 8cb5630238352459037b3647eebfabb5554566f6-dirty"
ppericard
parents: 1
diff changeset
109 plotVar.pdf
c8533e9298e5 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 8cb5630238352459037b3647eebfabb5554566f6-dirty"
ppericard
parents: 1
diff changeset
110 A pdf file with scatter plots for variables
0
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
111
2
c8533e9298e5 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 8cb5630238352459037b3647eebfabb5554566f6-dirty"
ppericard
parents: 1
diff changeset
112 ]]></help>
0
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
113
2
c8533e9298e5 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 8cb5630238352459037b3647eebfabb5554566f6-dirty"
ppericard
parents: 1
diff changeset
114 <expand macro="citations" />
0
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
115
d0b77b926863 "planemo upload for repository https://gitlab.com/bilille/galaxy-viscorvar commit 85dac6b13a9adce48b47b2b8cb28d2319ae9c1ca-dirty"
ppericard
parents:
diff changeset
116 </tool>