Mercurial > repos > pravs > msms_extractor

comparison MSMS_Extractor.xml @ 4:59654a11787e draft

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planemo upload
author pravs
date Thu, 03 Aug 2017 14:09:17 -0400
parents e7c63cfef363
children 2c3e2509e9bc
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3:e7c63cfef363 4:59654a11787e
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34 <help> 34 <help>
35 MSMS_Extractor reads scan numbers from the PSM report (scan numbers with identified PSM) and gives option to create a new mzml file, either with those scans or without those scans. 35 MSMS_Extractor reads scan numbers from the PSM report (scan numbers with identified PSM) and gives option to create a new mzml file, either with those scans or without those scans.
36 36
37 Remove option: 37 ----
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39 REMOVE option:
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38 Creates a new mzml file with all the unidentified scans (removes those that are in the PSM report). 41 Creates a new mzml file with all the unidentified scans (removes those that are in the PSM report).
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40 Retain option: 43
44 RETAIN option:
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41 Creates a new mzml file with only those scans that is present in the PSM report. In addition to this, it also has an option to add N number of randomly selected scans to the output mzml file. 46 Creates a new mzml file with only those scans that is present in the PSM report. In addition to this, it also has an option to add N number of randomly selected scans to the output mzml file.
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48 ----
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44 Please Note: This tool currently works only with PeptideShaker generated PSM report file. 50 Please Note: This tool currently works only with PeptideShaker generated PSM report file.
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46 </help> 52 </help>
47 </tool> 53 </tool>