Mercurial > repos > pravs > msms_extractor
changeset 4:59654a11787e draft
planemo upload
| author | pravs |
|---|---|
| date | Thu, 03 Aug 2017 14:09:17 -0400 |
| parents | e7c63cfef363 |
| children | c2f8e3164537 |
| files | MSMS_Extractor.xml |
| diffstat | 1 files changed, 8 insertions(+), 2 deletions(-) [+] |
line wrap: on
line diff
--- a/MSMS_Extractor.xml Thu Aug 03 14:00:33 2017 -0400 +++ b/MSMS_Extractor.xml Thu Aug 03 14:09:17 2017 -0400 @@ -34,12 +34,18 @@ <help> MSMS_Extractor reads scan numbers from the PSM report (scan numbers with identified PSM) and gives option to create a new mzml file, either with those scans or without those scans. -Remove option: +---- + +REMOVE option: + Creates a new mzml file with all the unidentified scans (removes those that are in the PSM report). -Retain option: + +RETAIN option: + Creates a new mzml file with only those scans that is present in the PSM report. In addition to this, it also has an option to add N number of randomly selected scans to the output mzml file. +---- Please Note: This tool currently works only with PeptideShaker generated PSM report file.