comparison tool_dependencies.xml @ 5:6bf0203ee17e draft

planemo upload
author pravs
date Wed, 20 Jun 2018 20:43:56 -0400
parents
children 8e9428eca82c
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4:b014014e685a 5:6bf0203ee17e
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="R" version="3.2.1">
4 <repository changeset_revision="d9f7d84125b7" name="package_r_3_2_1" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
5 </package>
6
7 <package name="r-protrnacorr" version="0.0.1">
8 <install version="1.0">
9 <actions>
10 <action type="setup_r_environment">
11 <repository changeset_revision="d9f7d84125b7" name="package_r_3_2_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
12 <package name="R" version="3.2.1" />
13 </repository>
14 <package>https://cran.r-project.org/src/contrib/MASS_7.3-50.tar.gz</package>
15 <package>https://cran.r-project.org/src/contrib/mgcv_1.8-24.tar.gz</package>
16 <package>https://cran.r-project.org/src/contrib/zoo_1.8-2.tar.gz</package>
17 <package>https://cran.r-project.org/src/contrib/xts_0.10-2.tar.gz</package>
18 <package>https://cran.r-project.org/src/contrib/curl_3.2.tar.gz</package>
19 <package>https://cran.r-project.org/src/contrib/TTR_0.23-3.tar.gz</package>
20 <package>https://cran.r-project.org/src/contrib/quantmod_0.4-13.tar.gz</package>
21 <package>https://cran.r-project.org/src/contrib/abind_1.4-5.tar.gz</package>
22 <package>https://cran.r-project.org/src/contrib/gtools_3.5.0.tar.gz</package>
23 <package>https://cran.r-project.org/src/contrib/gdata_2.18.0.tar.gz</package>
24 <package>https://cran.r-project.org/src/contrib/bitops_1.0-6.tar.gz</package>
25 <package>https://cran.r-project.org/src/contrib/caTools_1.17.1.tar.gz</package>
26 <package>https://cran.r-project.org/src/contrib/gplots_3.0.1.tar.gz</package>
27 <package>https://cran.r-project.org/src/contrib/ROCR_1.0-7.tar.gz</package>
28 <package>https://cran.r-project.org/src/contrib/lattice_0.20-35.tar.gz</package>
29 <package>https://cran.r-project.org/src/contrib/DMwR_0.4.1.tar.gz</package>
30 <package>https://cran.r-project.org/src/contrib/data.table_1.11.4.tar.gz</package>
31 <!--<package>https://cran.r-project.org/src/contrib/Archive/grid/grid_0.7-3.tar.gz</package>-->
32 <package>https://cran.r-project.org/src/contrib/Archive/nlme/nlme_3.1-120.tar.gz</package>
33 <!--<package>https://cran.r-project.org/src/contrib/nlme_3.1-137.tar.gz</package>-->
34 </action>
35 </actions>
36 </install>
37 <readme>
38 Contains a tool dependency definition that downloads and installs protein rna correlation tool package for R library.
39 </readme>
40 </package>
41 <package name="x11" version="1.5.0">
42 <repository changeset_revision="2ecb3f1f8fbb" name="package_libx11_1_5_0" owner="devteam" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
43 </package>
44 </tool_dependency>