view tool_dependencies.xml @ 5:6bf0203ee17e draft

planemo upload

<?xml version="1.0"?>
<tool_dependency>
    <package name="R" version="3.2.1">
        <repository changeset_revision="d9f7d84125b7" name="package_r_3_2_1" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    
    <package name="r-protrnacorr" version="0.0.1">
        <install version="1.0">
            <actions>
                <action type="setup_r_environment">
                    <repository changeset_revision="d9f7d84125b7" name="package_r_3_2_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
                        <package name="R" version="3.2.1" />
                    </repository>
                    <package>https://cran.r-project.org/src/contrib/MASS_7.3-50.tar.gz</package>
                    <package>https://cran.r-project.org/src/contrib/mgcv_1.8-24.tar.gz</package>
                    <package>https://cran.r-project.org/src/contrib/zoo_1.8-2.tar.gz</package>
                    <package>https://cran.r-project.org/src/contrib/xts_0.10-2.tar.gz</package>
                    <package>https://cran.r-project.org/src/contrib/curl_3.2.tar.gz</package>
                    <package>https://cran.r-project.org/src/contrib/TTR_0.23-3.tar.gz</package>
                    <package>https://cran.r-project.org/src/contrib/quantmod_0.4-13.tar.gz</package>
                    <package>https://cran.r-project.org/src/contrib/abind_1.4-5.tar.gz</package>
                    <package>https://cran.r-project.org/src/contrib/gtools_3.5.0.tar.gz</package>
                    <package>https://cran.r-project.org/src/contrib/gdata_2.18.0.tar.gz</package>
                    <package>https://cran.r-project.org/src/contrib/bitops_1.0-6.tar.gz</package>
                    <package>https://cran.r-project.org/src/contrib/caTools_1.17.1.tar.gz</package>
                    <package>https://cran.r-project.org/src/contrib/gplots_3.0.1.tar.gz</package>
                    <package>https://cran.r-project.org/src/contrib/ROCR_1.0-7.tar.gz</package>
                    <package>https://cran.r-project.org/src/contrib/lattice_0.20-35.tar.gz</package>
                    <package>https://cran.r-project.org/src/contrib/DMwR_0.4.1.tar.gz</package>
                    <package>https://cran.r-project.org/src/contrib/data.table_1.11.4.tar.gz</package>
                    <!--<package>https://cran.r-project.org/src/contrib/Archive/grid/grid_0.7-3.tar.gz</package>-->
                    <package>https://cran.r-project.org/src/contrib/Archive/nlme/nlme_3.1-120.tar.gz</package>
                    <!--<package>https://cran.r-project.org/src/contrib/nlme_3.1-137.tar.gz</package>-->
                </action>
            </actions>
        </install>
        <readme>
        Contains a tool dependency definition that downloads and installs protein rna correlation tool package for R library.
        </readme>
    </package>
    <package name="x11" version="1.5.0">
        <repository changeset_revision="2ecb3f1f8fbb" name="package_libx11_1_5_0" owner="devteam" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
</tool_dependency>