Mercurial > repos > prog > mtblsdwnld
diff README.md @ 0:8dab200e02cb draft
"planemo upload commit 239561a6401593c5f87df40ac971a9aa393c4663-dirty"
author | prog |
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date | Tue, 07 Jan 2020 09:05:21 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/README.md Tue Jan 07 09:05:21 2020 -0500 @@ -0,0 +1,40 @@ +Metabolights Downloader +======================= + +[![Build Status](https://travis-ci.org/workflow4metabolomics/mtbls-dwnld.svg?branch=master)](https://travis-ci.org/workflow4metabolomics/mtbls-dwnld) + +A [Metabolights](http://www.ebi.ac.uk/metabolights/) study downloader for [Galaxy](https://galaxyproject.org/), part of the [Workflow4Metabolomics](http://workflow4metabolomics.org/) project, and developed during the [PhenoMeNal](http://phenomenal-h2020.eu/home/) project. + +For more information, see the galaxy tool page, help section, available inside `mtbls-dwnld_config.xml`. + +## Requirements + + * Python 3.8 + * isatools 0.10.3 + * `unzip` program. + * `wget` program. + * `ascp` (Aspera secure copy) program, version 3.7.4 or greater, which you can download [here](http://downloads.asperasoft.com/en/downloads/62). + +## Updates + +### 4.1.4 + + * Use MTBLS29 instead of MTBLS30, which has been removed from public repository, for testing. + * Make planemo tests pass on Travis-CI. + * Run several times ascp downloads for tests on Travis-CI, due to connection issues. + +### 2.0.4 + + * Test presence of downloader program. + * Correct running of `wget`. + +### 2.0.3 + + * Allow to choose the downloading method (`wget` or `aspera`). + * Ask to specify is the study to download is public or private. + * Allow to download all assays at once and convert them to W4M format. + * Allow to download *mzMl* and *mzData* files as collections. + +### 1.3.0 + + * Allow to choose the assay to extract and convert to W4M format.