Mercurial > repos > prog > mtblsdwnld
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"planemo upload commit 76293bd47447c171c939b4f3c194fd0cfbd7f69c-dirty"
author | prog |
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date | Thu, 04 Mar 2021 11:21:03 +0000 |
parents | 8dab200e02cb |
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Metabolights Downloader ======================= [![Build Status](https://travis-ci.org/workflow4metabolomics/mtbls-dwnld.svg?branch=master)](https://travis-ci.org/workflow4metabolomics/mtbls-dwnld) A [Metabolights](http://www.ebi.ac.uk/metabolights/) study downloader for [Galaxy](https://galaxyproject.org/), part of the [Workflow4Metabolomics](http://workflow4metabolomics.org/) project, and developed during the [PhenoMeNal](http://phenomenal-h2020.eu/home/) project. For more information, see the galaxy tool page, help section, available inside `mtbls-dwnld_config.xml`. ## Requirements * Python 3.8 * isatools 0.10.3 * `unzip` program. * `wget` program. * `ascp` (Aspera secure copy) program, version 3.7.4 or greater, which you can download [here](http://downloads.asperasoft.com/en/downloads/62). ## Updates ### 4.1.4 * Use MTBLS29 instead of MTBLS30, which has been removed from public repository, for testing. * Make planemo tests pass on Travis-CI. * Run several times ascp downloads for tests on Travis-CI, due to connection issues. ### 2.0.4 * Test presence of downloader program. * Correct running of `wget`. ### 2.0.3 * Allow to choose the downloading method (`wget` or `aspera`). * Ask to specify is the study to download is public or private. * Allow to download all assays at once and convert them to W4M format. * Allow to download *mzMl* and *mzData* files as collections. ### 1.3.0 * Allow to choose the assay to extract and convert to W4M format.