Mercurial > repos > proteomisc > gcms_lcms_analysis

diff tool_dependencies.xml @ 4:49c1ed90d6d6 draft

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author proteomisc
date Sat, 16 May 2015 05:06:35 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Sat May 16 05:06:35 2015 -0400
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+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="R" version="3.0.3">
+        <repository changeset_revision="6e0eee4ea4e1" name="package_r_3_1_2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="xcms" version="1.44.0">
+      <install version="1.0">
+          <actions>
+              <action type="setup_r_environment">
+                  <repository changeset_revision="6e0eee4ea4e1" name="package_r_3_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
+                      <package name="R" version="3.0.3" />
+                    </repository>
+    <package>http://cran.ms.unimelb.edu.au/src/contrib/Rcpp_0.11.6.tar.gz?raw=true</package>
+    <package>http://bioc.ism.ac.jp//packages/3.1/bioc/src/contrib/BiocGenerics_0.14.0.tar.gz?raw=true</package>
+    <package>http://bioc.ism.ac.jp//packages/3.1/bioc/src/contrib/Biobase_2.28.0.tar.gz?raw=true</package>
+    <package>http://bioc.ism.ac.jp//packages/3.1/bioc/src/contrib/ProtGenerics_1.0.0.tar.gz?raw=true</package>
+    <package>http://bioc.ism.ac.jp//packages/3.1/bioc/src/contrib/mzR_2.2.1.tar.gz?raw=true</package>
+    <package>http://bioc.ism.ac.jp//packages/3.1/bioc/src/contrib/xcms_1.44.0.tar.gz?raw=true</package>
+               </action>
+            </actions>
+        </install>
+        <readme>
+            xcms is a package from Bioconductor containing all needed steps for GC-LCMS analysis begening with the preprocessing and ending with
+            the exploratory analysis.
+            integrated to the main galaxy toolshed by bensellak.taoufik@gmail.com for studies purpose and trainee ship on mass spectrometry 
+            analysis workflows and pipelines answering for some biological questions such as biomarquers identification extraction and  	
+            slection. targeted and untargeted (label free) quantification. 
+        </readme>
+    </package>
+</tool_dependency>