Mercurial > repos > proteore > proteore_build_protein_interaction_maps

diff build_protein_interaction_maps.xml @ 1:0a85d709c4ae draft

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planemo upload commit 567ba7934c0ca55529dfeb5e7ca0935ace260ad7-dirty
author proteore
date Tue, 12 Mar 2019 07:02:14 -0400
parents b0ac71686b99
children 99f6a94c1ade
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--- a/build_protein_interaction_maps.xml	Tue Mar 12 05:55:54 2019 -0400
+++ b/build_protein_interaction_maps.xml	Tue Mar 12 07:02:14 2019 -0400
@@ -1,4 +1,4 @@
-<tool id="build_protein_interaction_maps" name="Build Protein-Protein interaction network" version="2019.03.08">
+<tool id="build_protein_interaction_maps" name="Build Protein-Protein interaction network" version="2019.03.12.2">
 <description>[BioGRID, BioPlex, HuMAP]</description>
     <requirements>
     </requirements>
@@ -146,6 +146,8 @@
 The "Network" file contains information related to each interaction between two proteins (one row per binary interaction) while the "Nodes" file contains attributes (i.e. annotation, information) related to each gene/protein.
 Below is shown a brief example of each output file when BioGRID is selected. Note that a "NA" is added when there is no available information.
 
+"Network" output file (example): 
+
 .. csv-table:: Network file (if BioGRID database selected - simulated data)
    :header: "Entrez_Gene_Interactor_A","Entrez Gene Interactor B","Gene symbol Interactor A","Gene symbol Interactor B","Experimental System","Experimental Type","Pubmed ID","Interaction Score","Phenotypes"
 
@@ -156,6 +158,8 @@
 
 **"Interaction Score"**: a positive for negative value recorded by the original publication depicting P-Values, Confidence Score, SGA Score, etc. Will be “NA” if no score is reported.
 
+"Nodes" output file (example):
+
 .. csv-table:: Nodes file (if BioGRID database selected - simulated data)
    :header: "Entrez gene ID","Official Symbol Interactor","Present in user input ids","ID present in Biogrid Human","Pathway"
    
@@ -202,8 +206,11 @@
 **Galaxy integration**
 
 David Christiany, Lisa Perus, Florence Combes, Yves Vandenbrouck - CEA, INSERM, CNRS, Grenoble-Alpes University, BIG Institute, FR
+
 Sandra Dérozier, Olivier Rué, Valentin Loux - INRA, Paris-Saclay University, MAIAGE Unit, Migale Bioinformatics platform, FR
+
 This work has been partially funded through the French National Agency for Research (ANR) IFB project.
+
 Contact support@proteore.org for any questions or concerns about the Galaxy implementation of this tool.
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     <citations>