Mercurial > repos > proteore > proteore_data_manager
comparison data_manager/resource_building.py @ 5:b05fa99ddda2 draft
"planemo upload commit a23ff40d482d58e0425108bf60372e5fcafb847e"
| author | proteore |
|---|---|
| date | Thu, 06 Feb 2020 04:02:50 -0500 |
| parents | e967a99d66b3 |
| children | 8f33a6e6e36c |
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| 4:e967a99d66b3 | 5:b05fa99ddda2 |
|---|---|
| 46 table = "proteore_protein_atlas_tumor_tissue" | 46 table = "proteore_protein_atlas_tumor_tissue" |
| 47 elif tissue == "HPA_full_atlas": | 47 elif tissue == "HPA_full_atlas": |
| 48 tissue_name = "HPA full atlas" | 48 tissue_name = "HPA full atlas" |
| 49 url = "https://www.proteinatlas.org/download/proteinatlas.tsv.zip" | 49 url = "https://www.proteinatlas.org/download/proteinatlas.tsv.zip" |
| 50 table = "proteore_protein_full_atlas" | 50 table = "proteore_protein_full_atlas" |
| 51 elif tissue == "HPA_RNA_tissue": | |
| 52 tissue_name = "HPA RNA tissue" | |
| 53 url = "https://www.proteinatlas.org/download/rna_tissue_consensus.tsv.zip" | |
| 54 table = "proteore_protein_atlas_rna_tissue" | |
| 51 | 55 |
| 52 output_file = tissue +"_"+ time.strftime("%d-%m-%Y") + ".tsv" | 56 output_file = tissue +"_"+ time.strftime("%d-%m-%Y") + ".tsv" |
| 53 path = os.path.join(target_directory, output_file) | 57 path = os.path.join(target_directory, output_file) |
| 54 unzip(url, path) #download and save file | 58 unzip(url, path) #download and save file |
| 55 tissue_name = tissue_name + " " + time.strftime("%d/%m/%Y") | 59 tissue_name = tissue_name + " " + time.strftime("%d/%m/%Y") |