Mercurial > repos > proteore > proteore_data_manager

diff data_manager_conf.xml @ 4:e967a99d66b3 draft

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"planemo upload commit 540dd383c0617193db43bf11457011888751b022-dirty"
author proteore
date Thu, 23 Jan 2020 08:38:02 -0500
parents 9ec42cb35abd
children b05fa99ddda2
line wrap: on
line diff
--- a/data_manager_conf.xml	Thu Sep 05 07:45:16 2019 -0400
+++ b/data_manager_conf.xml	Thu Jan 23 08:38:02 2020 -0500
@@ -46,6 +46,21 @@
                 </column>
             </output>
         </data_table>
+        <data_table name="proteore_protein_full_atlas">
+            <output>
+                <column name="id"/>
+                <column name="release"/>
+                <column name="name" />
+                <column name="tissue" />
+                <column name="value" output_ref="output" >
+                    <move type="file">
+                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">protein_atlas/</target>
+                    </move>
+                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/protein_atlas/${release}.tsv</value_translation>
+                    <value_translation type="function">abspath</value_translation>
+                </column>
+            </output>
+        </data_table>
         <data_table name="proteore_id_mapping_Human">
             <output>
                 <column name="id" />