Mercurial > repos > proteore > proteore_data_manager
view data_manager_conf.xml @ 4:e967a99d66b3 draft
"planemo upload commit 540dd383c0617193db43bf11457011888751b022-dirty"
| author | proteore |
|---|---|
| date | Thu, 23 Jan 2020 08:38:02 -0500 |
| parents | 9ec42cb35abd |
| children | b05fa99ddda2 |
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<?xml version="1.0"?> <data_managers> <data_manager tool_file="data_manager/resource_building.xml" id="resource_building"> <data_table name="proteore_peptide_atlas"> <output> <column name="id"/> <column name="name" /> <column name="tissue" /> <column name="value" output_ref="output" > <move type="file"> <!--source>${path}/${value}.tsv</source--> <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">peptide_atlas/</target> </move> <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/peptide_atlas/${id}.tsv</value_translation> <value_translation type="function">abspath</value_translation> </column> </output> </data_table> <data_table name="proteore_protein_atlas_normal_tissue"> <output> <column name="id"/> <column name="release"/> <column name="name" /> <column name="tissue" /> <column name="value" output_ref="output" > <move type="file"> <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">protein_atlas/</target> </move> <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/protein_atlas/${release}.tsv</value_translation> <value_translation type="function">abspath</value_translation> </column> </output> </data_table> <data_table name="proteore_protein_atlas_tumor_tissue"> <output> <column name="id"/> <column name="release"/> <column name="name" /> <column name="tissue" /> <column name="value" output_ref="output" > <move type="file"> <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">protein_atlas/</target> </move> <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/protein_atlas/${release}.tsv</value_translation> <value_translation type="function">abspath</value_translation> </column> </output> </data_table> <data_table name="proteore_protein_full_atlas"> <output> <column name="id"/> <column name="release"/> <column name="name" /> <column name="tissue" /> <column name="value" output_ref="output" > <move type="file"> <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">protein_atlas/</target> </move> <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/protein_atlas/${release}.tsv</value_translation> <value_translation type="function">abspath</value_translation> </column> </output> </data_table> <data_table name="proteore_id_mapping_Human"> <output> <column name="id" /> <column name="release"/> <column name="name" /> <column name="species" /> <column name="value" output_ref="output" > <move type="file"> <!--source>${path}</source--> <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">id_mapping/</target> </move> <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/id_mapping/${release}.tsv</value_translation> <value_translation type="function">abspath</value_translation> </column> </output> </data_table> <data_table name="proteore_id_mapping_Mouse"> <output> <column name="id" /> <column name="release"/> <column name="name" /> <column name="species" /> <column name="value" output_ref="output" > <move type="file"> <!--source>${path}</source--> <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">id_mapping/</target> </move> <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/id_mapping/${release}.tsv</value_translation> <value_translation type="function">abspath</value_translation> </column> </output> </data_table> <data_table name="proteore_id_mapping_Rat"> <output> <column name="id" /> <column name="release"/> <column name="name" /> <column name="species" /> <column name="value" output_ref="output" > <move type="file"> <!--source>${path}</source--> <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">id_mapping/</target> </move> <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/id_mapping/${release}.tsv</value_translation> <value_translation type="function">abspath</value_translation> </column> </output> </data_table> <data_table name="proteore_biogrid_dictionaries"> <output> <column name="id" /> <column name="release"/> <column name="name" /> <column name="species" /> <column name="value" output_ref="output" > <move type="file"> <!--source>${path}</source--> <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">PPI_dictionaries/</target> </move> <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/PPI_dictionaries/${release}.json</value_translation> <value_translation type="function">abspath</value_translation> </column> </output> </data_table> <data_table name="proteore_bioplex_dictionaries"> <output> <column name="id" /> <column name="release"/> <column name="name" /> <column name="species" /> <column name="value" output_ref="output" > <move type="file"> <!--source>${path}</source--> <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">PPI_dictionaries/</target> </move> <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/PPI_dictionaries/${release}.json</value_translation> <value_translation type="function">abspath</value_translation> </column> </output> </data_table> <data_table name="proteore_humap_dictionaries"> <output> <column name="id" /> <column name="release"/> <column name="name" /> <column name="species" /> <column name="value" output_ref="output" > <move type="file"> <!--source>${path}</source--> <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">PPI_dictionaries/</target> </move> <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/PPI_dictionaries/${release}.json</value_translation> <value_translation type="function">abspath</value_translation> </column> </output> </data_table> <data_table name="proteore_nextprot_ref"> <output> <column name="id" /> <column name="release"/> <column name="name" /> <column name="value" output_ref="output" > <move type="file"> <!--source>${path}</source--> <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">proteore_nextprot_ref/</target> </move> <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/proteore_nextprot_ref/${release}.tsv</value_translation> <value_translation type="function">abspath</value_translation> </column> </output> </data_table> </data_manager> </data_managers>