comparison get_expression_profiles.xml @ 13:2173192d4824 draft default tip

"planemo upload commit 59b014e9f6e2d668cbd7c4844b10db3d59baefd8"

12:56c93d1fc8fd

<tool id="sel_ann_hpa" name="Get expression profiles" version="2019.06.27">
    <description>by (normal or tumor) tissue/cell type [Human Protein Atlas]
    </description>
    <requirements>
    </requirements>
    <stdio>
        <exit_code range="1:" />
    </stdio>

            <param name="database" type="select" label="Human Protein Atlas (normal or tumor tissue)">
                <option value="normal">Human Normal Tissue</option>
                <option value="tumor">Human Tumor Tissue</option>
            </param>
            <when value="normal">
                <param name="proteinatlas" type="select" label="Normal tissue HPA version 18.1" >
                    <options from_data_table="proteore_protein_atlas_normal_tissue">
                        <filter type="sort_by" column="0"/>
                    </options>
	            </param>
                <param name="normal_tissue" type="select" label="Select tissue(s)" multiple="True" display="checkboxes" optional="False">

                    <option value="Approved">Approved</option>
                    <option value="Uncertain">Uncertain</option>
                </param>
            </when>
            <when value="tumor">
                <param name="proteinatlas" type="select" label="Tumor tissue HPA version 18.1" >
                    <options from_data_table="proteore_protein_atlas_tumor_tissue">
                        <filter type="sort_by" column="0"/>
                    </options>
	            </param>
                <param name="cancer_tissue" type="select" label="Select cancer tissue(s)" multiple="True" display="checkboxes" optional="False">

-----

**Data sources (release date)**

Both normal and tumor tissues data are based on the Human Protein Atlas version 18.1 and Ensembl version 88.38. More information: https://www.proteinatlas.org/about/download

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.. class:: infomark

13:2173192d4824

<tool id="sel_ann_hpa" name="Get expression profiles" version="2020.05.07">
    <description>by (normal or tumor) tissue/cell type [Human Protein Atlas]
    </description>
        <requirement type="package" version="3.6.1">r-base</requirement>
    <requirements>
    </requirements>
    <stdio>
        <exit_code range="1:" />
    </stdio>

            <param name="database" type="select" label="Human Protein Atlas (normal or tumor tissue)">
                <option value="normal">Human Normal Tissue</option>
                <option value="tumor">Human Tumor Tissue</option>
            </param>
            <when value="normal">
                <param name="proteinatlas" type="select" label="Normal tissue HPA version" >
                    <options from_data_table="proteore_protein_atlas_normal_tissue">
                        <filter type="sort_by" column="0"/>
                    </options>
	            </param>
                <param name="normal_tissue" type="select" label="Select tissue(s)" multiple="True" display="checkboxes" optional="False">

                    <option value="Approved">Approved</option>
                    <option value="Uncertain">Uncertain</option>
                </param>
            </when>
            <when value="tumor">
                <param name="proteinatlas" type="select" label="Tumor tissue HPA version" >
                    <options from_data_table="proteore_protein_atlas_tumor_tissue">
                        <filter type="sort_by" column="0"/>
                    </options>
	            </param>
                <param name="cancer_tissue" type="select" label="Select cancer tissue(s)" multiple="True" display="checkboxes" optional="False">

-----

**Data sources (release date)**

23/10/2018: Both normal and tumor tissues data are based on the Human Protein Atlas version 18.1 and Ensembl version 88.38. 
12/12/2019: Both normal and tumor tissues data are based on The Human Protein Atlas version 19 and Ensembl version 92.38.
More information: https://www.proteinatlas.org/about/download

-----

.. class:: infomark