Mercurial > repos > proteore > proteore_expression_levels_by_tissue
changeset 13:2173192d4824 draft default tip
"planemo upload commit 59b014e9f6e2d668cbd7c4844b10db3d59baefd8"
| author | proteore |
|---|---|
| date | Thu, 07 May 2020 10:01:54 -0400 |
| parents | 56c93d1fc8fd |
| children | |
| files | get_expression_profiles.xml |
| diffstat | 1 files changed, 7 insertions(+), 4 deletions(-) [+] |
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--- a/get_expression_profiles.xml Fri Jun 28 05:10:08 2019 -0400 +++ b/get_expression_profiles.xml Thu May 07 10:01:54 2020 -0400 @@ -1,6 +1,7 @@ -<tool id="sel_ann_hpa" name="Get expression profiles" version="2019.06.27"> +<tool id="sel_ann_hpa" name="Get expression profiles" version="2020.05.07"> <description>by (normal or tumor) tissue/cell type [Human Protein Atlas] </description> + <requirement type="package" version="3.6.1">r-base</requirement> <requirements> </requirements> <stdio> @@ -68,7 +69,7 @@ <option value="tumor">Human Tumor Tissue</option> </param> <when value="normal"> - <param name="proteinatlas" type="select" label="Normal tissue HPA version 18.1" > + <param name="proteinatlas" type="select" label="Normal tissue HPA version" > <options from_data_table="proteore_protein_atlas_normal_tissue"> <filter type="sort_by" column="0"/> </options> @@ -137,7 +138,7 @@ </param> </when> <when value="tumor"> - <param name="proteinatlas" type="select" label="Tumor tissue HPA version 18.1" > + <param name="proteinatlas" type="select" label="Tumor tissue HPA version" > <options from_data_table="proteore_protein_atlas_tumor_tissue"> <filter type="sort_by" column="0"/> </options> @@ -242,7 +243,9 @@ **Data sources (release date)** -Both normal and tumor tissues data are based on the Human Protein Atlas version 18.1 and Ensembl version 88.38. More information: https://www.proteinatlas.org/about/download +23/10/2018: Both normal and tumor tissues data are based on the Human Protein Atlas version 18.1 and Ensembl version 88.38. +12/12/2019: Both normal and tumor tissues data are based on The Human Protein Atlas version 19 and Ensembl version 92.38. +More information: https://www.proteinatlas.org/about/download -----